Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: [S] COG3216 Uncharacterized protein conserved in bacteria, from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .
# Score Template Links and tools%idFirst MGKRVLFRRRNPDGLFERLRIYMWPRRSFSRSFQYVSKRILRLNATPTAVAAGVAAGVFASFFPLGSHFAIAAIVCWLISGNMVAAGLGTFVFGNPLTLPFVVGATWETGKIMLHGHMQSDERPAHLSEMLQTLSISQLWAPVLKPMLCGAVPLGLVFGLLFYGITRCGMTAFREKRRKRLAEKGSLLQQQEDIVLSPPLPTRHRRAGGLast
1 -9.440IDP05252 hypothetical protein lmo2854 [Listeria monocytogenes EGD-e] lmo2854 [Listeria monocytogenes EGD-e]  ali follow..  10  67.QLKSQKAMTNLQPKIKELQEKYSSKDN---------ETKQKLQQETMRLYQENSVNPMMGCLPLLIQMPILLGFYQAISRTAEIKTDSFLWMQ--YILPVVAALTTFLSSKISMMGQTQQNKSMAMIVYI-------------MPVMILFMGITLPSALALYWIIGNIFTVFQTLLINNPFKNKREQEALAAAQVAEDRLKKKAAN.. 255
2 -9.340IDP06244 SpoIIIJ family protein [Streptococcus pneumoniae TIGR4] NP_346466 [Streptococcus pneumoniae TIGR4]  ali follow..  7  80.QMVASRKMQEAQPRIKALRE---------QYPGRDMESRTKLEQEMRKVFKEMGVRQSDSLWPIL-IQMPVILALFQALSRVDFLKTGHFLWINLGSVDTTLVLPILAAVFTFLSTWLSNKALSERNGATTAMMY-------GIPVLIFIFAVYAPGGVALYWTVSNAYQVLQTYFLNNPFKIIAEREAVVQAQKDLENRKRKAKK.. 268
3 -8.750IDP05683 OxaA-like protein precursor [Listeria monocytogenes EGD-e] lmo1379 [Listeria monocytogenes EGD-e]  ali follow..  9  75LNLRTAKAQMGMQSKMAVAKPEI---DEIQARLKRATSKEEQATIQKEMMAVYSKYNI-MGCLPLLIQMPILMAFYYAIRGSSEIASHTFLWLGSPDMVLAIIAGLVYLAQYFVSMIGYSPEQKKQMKIIG-----------LMSPIMILFVSFTAPSALALYWAVGGLFLAGQTLLTKKLYMNKHPEIKVMEQEEKEFEQIVEEQK.. 272
4 -8.560IDP02785 gene: yaiY; putative inner membrane protein [Salmonella typhimurium LT2] STM0378 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  15  51...................................IYEHLMQVQDTGRRVEIGLGVGTIFGLVPFLTGCLIFAVIAAFLR................................................................................................................................. 96
5 -7.870IDP06137 inner membrane protein translocase component YidC [Helicobacter pylori J99] NP_224061 [Helicobacter pylori J99]  ali follow..  11  365IVRIILYPLSYKGMVSMQKLKELAPKMKELQ--EKYKGEPQKLQAHMMQLYKKHGANPLGGCLPLILQIVFFAIYRVLYNAVELKSSEWVLWIHDLSIMDPYFILPLLMGASMYWHQSVTPNTMTDPMQAKIF---------KLLPLLFTIFLITFPAGLVLYWTTHNILSVLQQLIINKVLENKKRAHAQNIKE.............. 549
6 -7.750IDP05509 gene: spoIIIJ2; stage III sporulation protein J [Bacillus anthracis str. Ames] BA_5736 [Bacillus anthracis str. Ames]  ali follow..  10  81.QTKSTKAMQALQPEMVKLKE---------KYSSKDQATQQKLQQEMMQLYQKNGVNPLAGCLPIFVQMPILFAFYHAIMRTSEISKHTFLWFDDPYILPVVAAITTFIQQKLAMAGTAGQNPQMAMMLWL-------------MPIMILIFAINFPAALSLYWVVGNIFGIAQMYLIKGPEIKASKAGGSSK................ 255
7 -7.540IDP91323 hypothetical protein VV2_0301 [Vibrio vulnificus CMCP6] VV2_0301 [Vibrio vulnificus CMCP6]  ali follow..  15  88.........................................................................................................................................TQLTGAIAPVLIGAEPPPLTLLATVSIIGFGKYAMMQEIQKEEALKRAAIIQAAKAQGGAHAAATQ...... 163
8 -7.240IDP00174 putative membrane protein YPO1140 [Yersinia pestis CO92]  ali follow..  15  183LAEEALFRGYLQQRLGQWLGSYP--------VITALLFGSAHFAGGPLLMLFAALAGVIYGLA--------------WLWSGRLWVAVAFHFALNLMHLLFFTY......................................................................................................... 266
9 -7.050IDP00194 putative membrane protein YPO0983 [Yersinia pestis CO92]  ali follow..  8  128ISEEIIFR------LLNAGIGFGRRGRLLAVVITSLLFALVHTQLYPATFVSLFVFSAILCEV--------------RIRTGSLLMPMVLHSANNIASVAWVLTLS....................................................................................................... 216
10 -6.940IDP91361 NhaP-type Na+/H+ and K+/H+ antiporters [Vibrio vulnificus CMCP6] VV1_2840 [Vibrio vulnificus CMCP6]  ali follow..  12  22................................LVRHLLKGSQVPYTVALLILGIAIGFLFLFLPTLIFESAFAMEVHLFRRM-VILAVPGLMLAIWLTAELVAWVCLMFGALISATDP---------------VAVVALLKEVSSRLIEGESLLNDGTAIVFFSLFYGWVL...................................... 193
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.