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Query: [C] COG3658 Cytochrome b, from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKNKTKVWDFPTRLFHWLLAASLPFMWYSAKTGGDMLQWHTRVGLFILFLLVFRLCWGIWGSDTARFSRFVRGWSGIREYMKNGIPEHVQPGHNPLGALMVVALLAAVSFQVGTGLFAADENTFSTNGYLNHLVSEHTGSLMRKIHLNFFKLLAVFSAVHIAAVAAYRVFKKKNLVLPMITGFKYIEGKTSIRFAGKAALAAALSVAALAAAAILLLSLast
1 -6.700IDP92689 hypothetical protein SAVC_09040 [Staphylococcus aureus subsp. aureus VC40] YP_005291395 [Staphylococcus aureus subsp. aureus VC40]  ali follow..  13  304............................................................QSNYFRFQYF-----------------------NPLKSERYYRNLDEQVLALITG-SKQRSFEPHEKDDFTVVKKQEDNKKSASTAYSKSWLAIVCSMMVVFSIMLFLFVKRN---------KKKNKNESQRR......................... 419
2 -6.480IDP04298 gene: phhB; pterin-4-alpha-carbinolamine dehydratase [Vibrio cholerae O1 biovar eltor str. N16961] VCA0827 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  18  32........................................................WALIHRKRYRFKNF----KQAWAFSNQIAELAEQEFHNPAILLEWGNVTVTWWSHSIKGLHKND.................................................................................................. 98
3 -6.210IDP06321 ABC transporter permease [Streptococcus pneumoniae TIGR4] NP_345398 [Streptococcus pneumoniae TIGR4]  ali follow..  9  13LIKNRKLY-LAVTITYLFYSLTFNPKIAEIRGGTTIQATLGFGMFVVTLASAIIVLYAVMKNRSKELGIYG-------------------LEKRHLISMTFKELVVFGILTVGAGIGIGALFDKLIFAFLLKLMKLKVELVATFQMNVVIAVLVVFGLIFLGLMFLNALRIARMNALQLSREKASGE-----KRGRFLPLQTILGSISLGIGYYLALT 219
4 -5.530IDP92050 MAK16 protein, putative [Toxoplasma gondii ME49] TGME49_049950 [Toxoplasma gondii ME49]  ali follow..  9  1MQNDEVIWN--------VINKDFCAFKVKTLREDMCRNEYNVTG------KCNRVSCPLANSNYGTVVE---HQGSLFLCLKTIER-----AHLPKKLWEKIRL------------------------------PLNIKQAKEVIDREMKNVYKKHQAIKLKQMLDRMRRLELKPKEKLVPIKQKTERREKAREKKAEVAAHL............... 158
5 -5.430IDP05473 hypothetical protein BA_2626 [Bacillus anthracis str. Ames] BA_2626 [Bacillus anthracis str. Ames]  ali follow..  9  77LGRWGYLR----RDL-WFFPTEVRRNGVSGYTWQGGR-------------------RRKVSYRYQQISNYM................................................................................................................................................... 131
6 -5.350IDP92691 hypothetical protein SAUSA300_0346 [Staphylococcus aureus subsp. aureus USA300_FPR3757] YP_493060 [Staphylococcus aureus subsp. aureus USA300_FPR3757]  ali follow..  11  345...........TASVIGGAIAGLVLSIILANSGILRESMEAGLGIVAVILMFIVGVWMHKRSNAKRWNDMIKN------------MYANAISNGNLVLLATIGLISVLVIIFYMGMIGELATKDFIIGIALAIVILIIFALL-----RVLSIFIFIMGFKMLGVSIQKLQLLGAMPRHVIEGFPTINWLGFYPSYEPLIAQGAYIMVVAILIF..... 556
7 -5.140IDP02334 gene: cspC; cold shock protein [Francisella tularensis subsp. tularensis SCHU S4] FTT0391c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  17  30............................................................................................................................................................VFVHISKLNGETLAEGQQVTFETQEGRKGPEAIN............................ 63
8 -5.010IDP91390 Lipid A core - O-antigen ligase [Vibrio vulnificus CMCP6] VV1_1426 [Vibrio vulnificus CMCP6]  ali follow..  12  295............RAYTFPQALDMLIE-------------KPFTGY------------GY-GNFESAYTLYTARQHLLNKQYPPALPAMDHP-HN---------LLYWGVEGGLVPLLG-----------IFLAAILVLNRIYSAKKGTRLAMFALFVPIVLHSQLEYPFYHSA-IILIYWVDQRVAKVKSVNFSRISKTALRIASLVVPILTTFYMLS 459
9 -4.690IDP06252 non-heme iron-containing ferritin [Streptococcus pneumoniae TIGR4] NP_346019 [Streptococcus pneumoniae TIGR4]  ali follow..  8  38.......................................QAVADLYVAHVALHQVHWYMHGRGFLVWHPKMDE-EALDGQLDEISERLITLGGSPFSTLTEFL----------NSEIEEEAGEYRNVEESLERVLVIYRYLSELFQKGLDVT----VTNGIFAGAKTETDKTIWMLAAELG..................................... 173
10 -4.670IDP90996 gene: dps; DNA starvation/stationary phase protection protein Dps [Yersinia pestis KIM 10] y1677 [Yersinia pestis KIM10+]  ali follow..  15  35.......................................QMVIQFIDLSLITKQAHWNMRGANFVAVHEMLDG-TALTDHLDTFAERAVQLGGVALGTAQVINDKTPL.............................................................................................................. 104
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.