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Query: [R] COG3907 PAP2 (acid phosphatase) superfamily protein, from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MITVPLFATSASGHTVKISKTTRQASTGPSTLNNRSTVPTIKTISLYSLPLSFYFWQVFGLLLVGLLFLALSRSEQLDWLISNYWFDPVGQNFPWEHNKWLDLLNHRLLKMALIATAIAALLWGIYRRNGRLVTTALLFGLGPLVIGILKATSAHSCPWDLVEYGGKALNYVLMDTAPPGAGPGHCFPGGHASSGFAVMALFFLFYPERPRLAMLCWFAGIGLGMLMGFGQIMRGAHFLTHNLWAGWWVWLSQLAAFWIISGYYQRIKGTELast
1 -42.200IDP06119 hypothetical protein jhp1487 [Helicobacter pylori J99] NP_224205 [Helicobacter pylori J99]  ali follow..  13  1......................................................................MKKLKGLFLSLLLWVYPLKSEPI----NEGAYILEEIGD-VLRFLPIFVGTVSLAMRDYRGLGELAVGTLVTQGVIYGLKGAFSTAHKDGARV-----------FAKRPCCNSWRGMPSGHAGGAFSAAGFV------YYRYGWKPALPVIALAILTDTSRVVAGQHTILQVTIGSLIAWGFAYLFTSRYKPKRWM..... 175
2 -25.300IDP02008 putative phosphatase [Salmonella typhimurium LT2] STM3595 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  12  43..AFNDLEAQWLTQLRKALQGDTAALTRDALAQMRQNSIQADNAWLQASGYDFHTTENQQMGITLL-----EAVLKDNLATVTAINHDADVN--RHQALADAESVEYLYFLSDAMGPRLGRAFLAAYDKGELGKAAALIKASEVSTGAAKKYFHYPRPYQVPG---LTPDDVVVKDGHPYTAGGGAFPSGHTNTGYTDALLMAEMIPERFD-------ALVIRGARYGYSRLVLGVHYPLDVMGARMVAQRNVAHYLNDPYYRTLFNEARA 306
3 -8.130IDP04349 putative inner membrane protein [Salmonella typhimurium LT2] STM0557_1_550 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  1.............................................MRRKMVNNRLKMVIAILIVFSLVYSIGFITPMDYSVKMHYLGWSGRVVSDTISTSLLKFFSPHIYNAINSAALTLMVLCWTKSSPSPYVMIFLFFLYFVANPALGQTN----------LVGSANYL---------------------TNMFIAIYILISIYLSNGKKSNLILFVYAISSIFAGCS---------NENTSLVVVLISVAYFFIMNRNKYL....... 202
4 -7.160IDP91390 Lipid A core - O-antigen ligase [Vibrio vulnificus CMCP6] VV1_1426 [Vibrio vulnificus CMCP6]  ali follow..  8  54.........................................................PTTWIAFSFVFALGLRYSKLTIGLFVSCLILTVPLFYANSHYMQSVSRLVGLWAGFGFFVLLQQFSFSNKYKQRLLWLVVLAVVIESFIGYYQFLWLKPGNWMGYDTLSNRPY---------------IFQQPNVMASFLATGLGYLLARQPHKYNKYLIPLLTVPLIVVLASR-------------TGWLAAMIATLLLLPYLYRFGTKIR.. 258
5 -6.830IDP04526 putative inner membrane protein [Salmonella typhimurium LT2] STM1637_1_516 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  10  2....................................ALPQLSIWQPGDGLRKIKYKYHVCLIVIFSVLIRLLFLTDCDEASSVLISRHS-------DNLLFHAAFDVHPPLYYLLLHDWMILWGDSIAAVRSLSLLFGILTVVLVIALTRWLANE----RTALLAGWFAALMPMAVHYSQETRMYAL-----MGMLTLAAALALMMWIKTPTHNRYLVAYALLMTFSFYT------HYFT-------LFTLIAHWIAVTILSCQSHKTACY 212
6 -6.530IDP04380 gene: rfaL; O-antigen ligase [Salmonella typhimurium LT2] STM3713_1_404 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  15  68.........................................................VFYSVAVLSLILVYSILISPDMKES------------------FKEFENTVLEGFLLYTLLIPVLLKDETKETVAKIVLFSFLTSLGLRCLAESILY---------------IEDYNKGIMPFISYAHRHMSDSMVFLFPALLNIWLFRKNAIKLVFLVLSAIYLFFILGTLSR-------------GAWLAVLIVGVLWAILNRQWKL..... 230
7 -6.300IDP00874 gene: yaoF; putative hemolysin STM1275 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  2................................................................................................................................KFTWIALPGVLLLSACSSS--PPRIGMPNPAAVEQQGGTLMPVQ----TPQGVRSDCKLPNGEIIDEWTLW........................................................................ 74
8 -6.140IDP00174 putative membrane protein YPO1140 [Yersinia pestis CO92]  ali follow..  12  147...............................................................................................................VPALLLLAVALGGLKIELHTPVWIGSFIIANLFFVCLAEEAL----------FRGQQRLGQWLGSYPALVITALLFGSAHFAGG-------------------LLMLFAALAGVIYGLAWLWSGFHFALNLMHLLFFTYPLY.................. 269
9 -5.990IDP95158 tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002921135 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  9  12................................................................................VQAMMQAARQGPTGERDYCLILLAFRHGMRISELLDLHY-----------------LDLHEGRVNVRRLKNGFSTIHPLRFDEREAIERWSLVRAGWKAADKTDALFISGTALSRQQAYRIIRSAGENAHMLRHACGYELAERGTDTRLIQDYLG-H--RNIRHTVRYTASNAARFAGIWERNNLLEEKDQ 194
10 -5.760IDP91946 integral membrane protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100004617 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  9  9.............................................................................................................KLILATCLAYLLAYFLNLSSAVSAGIIALLSLSDTRRSTLKLARNR------MLLALAIGVLAFHLS-------------GFHIWSLGLYLAFYVPLAYKMGWEIGITPSTVLVSHLLVQESTSP--DLLVNEFLLFAIGTGFALLVNLYMPSREEEIQHYH 152
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.