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Query: [S] COG4241 Predicted membrane protein, from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MYQTRPLTEGAVFASLFAVLFVITFFVPFIAFITMWFLPIPFLLYTLRHGLKPAVIVLLVASVVVMLILGPLLLLLALLFGTSGVVMGELYRREKSPFAVLLGGSLSNIAWVLLLFISSIVIMDVNPLVAAQETMRQSMQTAEQLIIGLGQEPSEALKQMEESINQLFYLGPAMVVICGTLLAAVTQLVAAPILKRLRHEVKPLPPFRTWSFPRSFLFYYLAVVVLFMIGFEEGSMPYIAVWNLLPVLEIIMAIQGFAVIFAYFHTKGVAKAVPVIIMILCIIVTPLLYLVRIIGIIDLGFDLRKRMGSQGKLast
1 -5.550IDP91928 ABC transporter membrane-spanning permease - amino acid transport [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100008890 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  128...............................................................................................................................KDRIVQKWSDFFKIDQATLLEPTYKSAVEVINRDLLLSAIVFVLAILLLVLVTVYQPMMEMKRVGVQKLLGFQDRAV--VKGNLYLLLGGALVINLGVFFLLDYKPKDLFPMLWLSHFLLLQLYLFISWLTYL--LIQKMTISSLLK-FGLLFNYLMKIGTTILLTVLLVGVGKSLEQENKELDY 317
2 -5.290IDP00754 gene: spa; immunoglobulin G binding protein A precursor SACOL0095 [Staphylococcus aureus subsp. aureus COL]  ali follow..  12  3...........................................................................................KKNIYSIRKLGVGIASVTLGTLLISGGVTPAANAAQHDEAQQNAFYQVLNMPNLNADQRNGFIQSLKDDPSQSANVLG............................................................................................................................................... 80
3 -5.220IDP91361 NhaP-type Na+/H+ and K+/H+ antiporters [Vibrio vulnificus CMCP6] VV1_2840 [Vibrio vulnificus CMCP6]  ali follow..  11  26LLKGSQVPYTVALLILGIAIGLAHRGNAFIDPHLFLFLFLPTLIFESAFAMEVHLFRRMFTQIVILAVPG-----LMLAIWLTAELVAWVLPEQWSWALCLMFGALISATDPVAVVALLTLIEGESLLNDGTAIVFFSLFYGWVLMEFSNPGEAITAPPWQAVAQFFVVVFVGLAV--GLILGGLCILWIDRVFN-IEISLTIAAAYSAFFISENFHVSGVVAVVTL-ISPEVAGFLHHFWEMMAHMANLIFLLVGILVAIRVPLDDKEAWLALFVLYLGIMAIRACSITVFM................... 352
4 -5.180IDP05521 putative cell surface protein [Clostridium difficile 630] CD1858 [Peptoclostridium difficile 630]  ali follow..  12  3...........................................................................................KMKNKKAAGVILGAVLLIVGVVISLFAGSKIVFAQLFTTLVNPIEAVAQIKVEVEVNVKYIFEDEKVFKEEKIKA.................................................................................................................................................. 79
5 -4.870IDP92002 competence protein CglD [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100000145 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  20  1MIKAFTMLESLLALSLVSILALGL................................................................................................................................................................................................................................................................................................ 24
6 -4.810IDP92613 RecName: Full=Serine-rich adhesin for platelets; AltName: Full=Staphylococcus aureus surface protein A; Flags: Precursor SAOUHSC_02990 [Staphylococcus aureus subsp. aureus NCTC 8325]  ali follow..  1MSKRQKAFHDSLANEKTRVRLYKSGKNWVKSGIKE-IMGLPFISHSLVSQDNQSISKKMTGYGLKTTAVIGGAFTVNMLHDQQAFAASDAPLTSELNTQSETVGNQNSTTIEASTSTADSTSVTKNSSSVQTSNSDTVSSEKSEKVTSTTNSTSNQQEKLTSTSESTSS............................................................................................................................................... 173
7 -4.710IDP06012 membrane-attack complex / perforin domain-containing protein [Toxoplasma gondii ME49] EEB00555 [Toxoplasma gondii ME49]  ali follow..  385VGDPSSMGDPGIRPPVLRF---YAQNEDGVSNDLTVLQPLGGYVRQYVACRQSETISELSNL-YQNELSVDASLQGGDPIGLNSFSASTGYRDFAKEVSK--KDTRTYMLKNYCMRYEAGVAQSNHFKWNVTIAFAAGVSQLPDVFDAHNPECACSAEQWRQDQNAEACTKTNVPIWISFIEQFGTHFLVRLFAYQVTAKRSEVEKMRNMGIDVKTQLKMQLGGVSGGAGQGTSSKKNQSSSEYQMNVQKETLVIGGRPPGNVSDPAALAAWADTVEELPMPVKFEVQPLYHLL-------EKQEAFKQAVT 693
8 -4.360IDP05182 gene: gerHA; spore germination protein GerHA [Bacillus anthracis str. Ames] BA_4984 [Bacillus anthracis str. Ames]  ali follow..  14  432MMYLDNLAEKDNVDFLEESLRALEY-SAYIQELMGEKSIFPLYINTERTDR---VTKALIDGKIAIFVDGSPSVL------LTPVSYFDFFISPEDYNVSWLYATFSRILRLIAVLFSICA-----------------------------------TPLYVAVLNYHYELIPSDLLETLILIEALFLELAIDLLREAGA-----------RLPMKVGQTLGIVGGIVI----------QASVQAGLTSNILLIIVALALASFITPIYKMGNAVRLLRFPFLIFAEIGGLFGISLGFIFLFTHLFRLTS.... 690
9 -4.350IDP92616 gene: vraT; hypothetical protein SAUSA300_1867 [Staphylococcus aureus subsp. aureus USA300_FPR3757] SAUSA300_1867 [Staphylococcus aureus subsp. aureus USA300_FPR3757]  ali follow..  1MTHKYISTQ-IIFTALMIIANFYYIFFEKIGFLLVLLLGCVLVYVGYLYFHKIRGLLAFWIGALLIAFTLLSNKYTIIILFVFLLLLIV-LIHKFKPKKVVATDEVMTSPSFIKQKWFGEQRTPVYVYKWEDVQIQHGIGDLHIDLTKAANIKENNTIVVRHILGKVQVILPVNYNINLHVAAFY............................................................................................................................... 187
10 -4.320IDP92666 hypothetical protein BB0797 [Bordetella bronchiseptica RB50] NP_887346 [Bordetella bronchiseptica RB50]  ali follow..  13  1MFADCQ--LMGMDLAFPDICK-----TPP--------LPIPYPNFALGPMGIPNVWNVLLMAMPAHNLLTTIALSN------PGIGMGLISQTVMAQARRITCVPNVLFGCIPATRLTGLTVQNTINTVGMRVVPSQLKVVLLGGGGGGGGAARAAKSAKAG...................................................................................................................................................... 146

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Dunbrack RL Jr, Dunker K, Godzik A. Protein structure prediction in biology and medicine. Pac Symp Biocomput. 2000;(12):93-4.