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Query: [S] COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain, from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIRGIARRPRCAVEGDWMSAGFCHVSEGKACPTAEMRGVALGRFLICGATGLSFLTLSLAAVSDAVAETLLWTGPDGAEWFTDAAWGPSHRVPNAGDDAMINTYGPVITIGTNAEVHQLSIGNAPGDGTLVVQGGLQTNSVILGATGGSSGTASFIGANWANDGDVSVGGNGTGSLLLLHGTTASSENIYVGESGTGSGSLKLDNSSTLTVADTVFAGYNSWSSSAAGGSGNVEVLGASSLYSANGVLANDPDTVGTALVSGGGSSWNMSSDLVVGEAGVGTLTITGGGMVISQTTTVIADLNSADGSSVTVSRLGSSLQSDSLVVGNGGAAKLVVEAAATVTSGEAIIGRHSASEATVTGDGSKWTTGDLQVGGDTSDPGGLAGNGTLNVTAGGSVDSTVAHLGVVAGATGSAIVDGKGSVWTVDRNSLEVGVSGAGSLAVTGGGLVDAANIIIGTNTGGNGSVRVSGADSTVKSRSDLNVGLYGNGSMTVEAGGAVKSRDGYVATYGGSTSAVTVTGDGSSWAMTGTFFVGYASGATGNVTVSNGGAIRATGVTLGDLAGASGTMTITGAGSKVTAYVDNGTVNSGSVDVGFQGSGSLSVVNGGSLDAYNLYVGNALGSSGAVLVSGVGSHVSVDGLMVVGNAGNGSVEITGGASLAAPTILIATEAGSTGVLSIGAGSGQTARSAGAVEARAIAFGAGNGSIVFNHSETGYTLSADISGAGRVVAEAGVTTLSGNNSYSGGTTISAGMLKGTAKSFGSGGIVNNAELVVDGGGTLSNAISGTGSFEKTGDGNLLLTGNSTYSGATAVSAGKLSVNGSLASAVSVGSGATVGGTGTIGGLTVNSGGTLAPGNSIGTLTSTGNATFASGSTYAVEIDADGSSDRLAVTGTITIANDVSLIVTPLGAHSAYSLGTRYTILTATGGVTGTFSSVDESFAYLTAKVAQSGDDATTYLSFLRTSPDSGLLAAATSTANARAAANAVEALGQTSPLYEAALFLQQGETQGAFSQLAGEIHPSLAMALINRSGQSRDVILNRLRSAFEGVDARPILPVAYAEGGQNPFAVDDGALSFWSSGFRSRGRIDSDGNGSSVDMNGGGILFGLDGELSDSWRAGVAAGYGHDGIKQTALAASADVDSYYLAAYAGTQIGPASLRLGAIHAFQDAETRRSISFSTLQESLSASYGGSTSQVFAEAAWRFDFDLTHIEPYANIAYVNTRTDGFQEKGAIAAVSSGSTRYDQLYTTFGARISRDIALEGMLGRAMFDLAWRHNYGDTAMGSSLFYEGGGVFSVASTSSPRDAAILNLGLSYDLTPSATLTFRYGAVFGAGVLDQSAAAELGVRFLast
1 -31.600IDP01900 gene: apeE; outer membrane esterase [Salmonella typhimurium LT2] STM0570 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  12  18...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAPLSACAFDSLTVIGDSLSDTGNNGR--AERYGLELSPSSNGGSNYAAGGATATPELNPQDNTAD-AKTGGKADHNGLYIHWVGATSAAAQVGLLLDAGAGLVVVPNVPDISATPMLLEAVITAGLGAAAPPALKAALDALAEGATPDFASRQQAIRKALLAAAATVSSNPFIQQLLVEQLLAGYEAAAGQASALTDYYNQMEEKGLEQHGGNIARADINGL-LANPQAFGLTNTVGMACPPGVSAFADHLHPGPQV-----HTIIAQYIQSIIAAPVQATYLNQSVQSMAQGSRTQLRQGENPVGSLGMFGGYSGGYQRYDNNEADGNGNHNNLTVGVDYQLNEQVLLGGLIAGSLDKQHPDD-NYRYDARGFQAAVFSHLRAGQAWLDSDLHFLSAKFSIQRSITLGALRRVEEGETNGRLWGARLTSGYDFVMVPLTTGPMLQYAWDYSHVNGYSEKLNTSSMRFGDQNAHSQVGSAGWRLDLRHS----IIHSWAQINYRRQFGDDTYVANGGLKSALTFSRDGKTQDKNWVDIAIGADFPLSATVSAFAGLSQTAGSDGNQTRYNVGFSARF 656
2 -30.700IDP04415 gene: icsA (virG); IcsA (VirG), outermembrane protein exposed to the bacterial surface by a C-terminal autotransporter domain and involved in the movement of intracellular bacteria by binding to N-WASP [Shigella flexneri] CAC05837 [Shigella flexneri]  ali follow..  11  25................................................................................................................................................................................................................................................................................................VKEKTCKLSFSPFVVGASLLLGGPIAFATPLSGTQELHFSEDNYEKLLTPVDGLSPLGAGEDGMDAWYITSSNPSHASRTKLRINSDIMISAGHGGAGDNNDGNSCGGNGGDSITGSDLSIINQGMILGGSGGSGADHNGDGGEAVTGDNLFIINGEIISGGHGGDSYSDSDGGNGGDAVTGVNLPIINKGTISGGNGGNNYGEGDGGNGGDAITGSSLSVINKGTFAGGNGGAAYGYGYDGYGGNAITGDNLSVINNGAILGGNGGHWGDAINGSNMTIANSGYIISGKEDDGTQNVAGNAIHITGGNNSLILHEGSVITGDVQVNNSSILKIINNDYTGTTPTIEGDLCAGDCTTSGNKFTVSGDVSFGENSSLNLAGISSLEASGNMSFGNNVKVEAIINNWAQKDYKLLSADKGITGFSVSNISIINPLLTTGAIDYTKSYISDQNKLIYGLSWNDTDGDSHGEFNLKENAELTVSTILADNLSHHNINSWDGKSLTKSGEGTLILAEKNTYSGFTNINAGILKMGTVEAMTRTAGVIVNKGATLNFSGMNQTVNTLLNSGNVGQTYVQKGNWH-GKGGILSLGANDNSKTDRLEIAGHAS--GITYVAVTNEGGSGD-KTLEGVQIISTDSSDKNAF------------------------------------------IQKGRIVAGSYDRLKQGTALTSQMDNQESKQMSNTWRPEAGSYIANLIAM----NTMFSPSLYDRH-----------------GSTIVDPTTGQLSETTMWIRTVGGHNEHNLADRQLKTTANRMVYQIGGD---HDGLHVGIMGAYGYQDSKTHNKSSRGTVSGYTAGLYSS--FQDEKERTGL-Y----MDA---LQYSWFNNTVKGDYSSKGITGALEAGYIYPTIRWTLNPQVQITRHGVKANDYIEHNGTMV---TSSGGNNIQAKLGLRTSLISQ-TLRKFEPFLEVNWKWS------------SKQYGVIMNGMSNNRNVIELKTGVGGRLADNLSIWGNVSQQLGNSYRDTQGILGVKYTF 1102
3 -28.700IDP90430 gene: pmpD; Putative Outer Membrane Protein D [Chlamydia trachomatis D/UW-3/CX] CT_812 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  12  164..........................................................................................................................ASLSGAALYSTEDLIFEKIKGGLEFASCSSLEQGGACAAQSILI----HDCQGLQVKHCTTAVNAEGSSANDHLGFGGGAFFVTGSLSGEKSLYMPAGDMVVANCDGGNSANFANGGAIAASGKVLENRALSGGAIAASSDIAFQNCAELVFKGNCAIGTED-LGGGAISSLGTVLLKNESASQGGAIFGKNCQISDNEGPVVFRDSGGGAIAAQEIVSIQNNQAGIGGKASFGGGIACGSFSSAGGASVLGTIDISKNLGAISFSRTLCTTSDLGQMEYQGGGALFGENISLSENAGVLTFKDNIV---KTFASNGKILGGGAILATGKVEITNNSEGTGNARAPQALPTQEEFPLFSKKEGRPLSSGYSGGGAILGREVAILHNAAVVFEQNRLQCSEEEATLLGCCGGGAVHGMDSTSIVGNSSVRFGNNYAMGQGVSGGALLSKTSRNIASLGGGALQASEGNCELVDNGYDNRGRVYGGAISCLRGDVVISGNKGRVEFKDNIATRLYVEETVEKVEEVEPAPEQKDNNELSFLGRAEQSFITAANQALFASEDGDLSPESSISSEELAKRRECAGGAIFAKRVR------IVDNQEAVVFSNNFSDIYGGAIFTGSLREEDKLDGQIPEVLISGNAGDVVFSGNSSKRDEHLPHTGGGAICTQNLTISQNTGNVLFYNNVACSGGAVRIEDHGNVLLEAFGGDIVGKESHITALNATEGHAIEERKSAEVLLINSRENPGTGSIRFLEAESKVPQCIHVQQGSLELLNGATLCSYGFKQDAGAKLAGAKLKILDSGTPVQQGHAISKPEAEIESSSEPEGAHSLWIAKNAQTTVPMVDIHTISVDLASFSSSQQEGTVEAPQVIVPGGSYVRSGELNLELVNTTGTGYENHALL--KAGALVFNALWE------EGAVLSALKNARFAHNLTAQRMEFDYSTNVWGFAFGGFRTLSAENLVAGYKGAYGGASAGVDIQLMEDFVLGVSGAAFLGKMDSQKFDAEVSRKGVVGSVYTGFLAGSWFFKGQYSLGETQNDMKTRYG----LGESSASWTSRGVLADALVEYRSLVGPVHFNPYVEVSYASMKFPGFTEQGREARSFEDASLTNITI-PLGMKFELAFIKGQFSEVNSLGISY-----EAVEGGAVQLEAGFDWEGAPMDLPRQELRVALENNTEWSSYFSTVLGLT-TSTDSKLGYEANTGLRLIF 1531
4 -27.800IDP93877 putative pertactin family virulence factor/autotransporter [Yersinia enterocolitica subsp. enterocolitica WA-314] EKA26326 [Yersinia enterocolitica subsp. enterocolitica WA-314]  ali follow..  13  1.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MENTNNPRRNILKPSTSKPTHSVLKKTVFKKSPIAKLVLFALFICG-----SSSAISDAKKIAPTHSGVVDKDVTLKLKQVAKDSIINGTGKLKLTGNSRAYSTQVNTGDMLPFQLEDQSIAIGNKISHGSIEVTDDAKALGTEIGLVNAKHEVRIINNITKKFEELVTMLIPPQGHVFDKKLGRMDISQQGKSNQTTIGMHGSLYLGGTGIAENTHIQEGGELVVQNLLDTPTLKDTTVSGVLTIMHGSDVLLQGKTEFLPTAKWNIK----------NNDIINEGQLIFRNGGVFYARIDGTGSLIKEDANTLTLQGNGDSNIPDYVYSGETYINNGDGGNVFIGNNSEMRGNSSINDLTISDTGVLNFNDKKVKLIIESNYVGQGGTLIFYSKRDDSETDRMLVEGNTY--GHTKVIINNLGGEGAQTDVG--LLIEVKGESKGEFE-VAGAYEYFLRRGSEDDRKKNWYMISDAAIFDKKSMAGEKIEEAIPESEENKTKVNPQLP--------PLNKAKAVNNSISQKIYRPENGSYIANLSMARNLFTSDLDNRSGNYK-------------KDAVTGEWRTSSMWIQTQGGIKQFGKTVDQLNIKGKYYSIQLGGD---QGNGRIGMLAGMGKATNHSKSNYSNGSVNGYNLGVYATWLTDQQN-KTGL-Y----IDT---AQYSWFNNAVNGQYKSSGFTSSIESGYTFNIGSTEIQPNAKITWVGINAQTHTAANKDII---NYTNRGQLITRIGAKTYLQTTNNDQQFMPFIAVNWLHQNHN------------TGAQLSGKSVSKNSAEFKIGVESKIDQRLHAWANINHQIGYNTNDTNALVGIKYAF 902
5 -25.900IDP90435 gene: pmpG; Putative Outer Membrane Protein G [Chlamydia trachomatis D/UW-3/CX] CT_871 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  10  38.................................................................................................................................................................................................................................................................................................................................................DGETLTVSFPYTVIGDPSGTTVFSAGELTLKNLDNSIAALPLSCFGNLLGSFTVLGRGHSLTFENIRTSTNG--AALSDSANSGLFTIEGFKELSFSNCNSLLAVLPAATTNNGSQTPTTTSTPSNGTIYSKTDLLLLNNEKFSF----YSNLVSGDGGAIDAKSLTVQGISKLC--------------------------QENTAQADGGACQVVTSFSAMANEAPIAFIANVAGVRGGGIAAVQDGQQGVSSSTSTEDPVVSFSRNTAVEFDG-----NVARVGGGIYSYGNVAFLNNGKTLFLNNVASPVYIAAEQPTNGQASNTSDNYGDGGAIFCKNGAQA------------AGSNNSGSVSFDGEGVVFFSSNVAAGKGGAIYAKKLSVANCGPVQFLGNIANDGGAIYLGESGELSLSADYGDIIFDGNLKRTAKENAADVNGVTVSSQAISMGSGGKITTLRAKAGHQILFNDPIEMANGNNQPAQSSEPLKINDGEGYTGDIVFANGN---STLYQNVTIEQGRIVLREKAKLSVNSLSQTGGSLYMEAGSTLDFVTPQPPQQPPAANQLITLSNLHTISGPIFFEDLDDTAYDRYDWLGSNQKIDVLKLQLGTQPSANAPSDLTLGNEMPKYG---DPNTANNGPYTLKATWTKTGYNPGPERVASLVPNSLWGSILDIRSAHSAIQASVDGR-------------------------SYCRGLWVSGVSNFFYHDRDALGQGYRYISGGYSLGANSYFGSS-MFGLAFTFGRSK---DYVVCRSNHHACIGSVYLSTK--DAFIRASYGFGNQHMKTSYT------AEESDVRWDNNCLVGEIGVGLPIVITPNELRPFVQAEFSYADHESFTEEGDQARAFRSGHLMNLSV-PVGVKFDRCSSTHPNKYSFM--GAYICDAYRTISGTQTTLSHQETWTTDAFHLARHGVIVRGSMYASLTSNIEVYGHGRYEYRDTSRGYGLSAGSKVRF 1013
6 -25.500IDP04414 gene: sepA; SepA, extracellular serine protease of the IgA1 protease family, secreted by a C-terminal autotransporter domain [Shigella flexneri] CAC05786 [Shigella flexneri]  ali follow..  12  265........................................................................................................................................................................GDSGSP-IGVLSSGTNYGNNWVVTTQDFLGQQPQNDFDKTIAYTS----GEGVLQWKYDAANGTGTLTQGNTTWDMHGKKGNDLNAGKNLLFTGNNGEVVLQNSV---NQGAGYLQFAGDYRVSALNGQTWMGGGIITDKGTHVLWQVNGVAGDNLH----GEGTLTVNGTGV-------------------------------------------NAGGLKVGDGTVILNQQADADGKVQAFSSVGIAS-----------------GRPTVVLSDSQQVNPDNISWGY---RGGRLELNGNNLTFTRLQAADYGAIITNNSEKKSTVTLDLQTLKASDINVPVNTVSIFGGRGSDLNNSSVWQNVGKDHNKAIDTVKQQKIEASSQPYMYHGQLNGNMDVNIPQLSGKDVLALDGSVNLPEGSITKKSGTLIFQGHPVIHAGTTTSSSQSDWETRQFTLEKLKLDAATFHLSRNGKMQGDINATNGSTVILGSSRVFTDRSDGTGNAVSSVEGSATATTVGDQSDYSGNVTLENKSSLQIMERFTGGIEAYDSTVSVTSQNAVFDRVGSFVNSSLTLGKGAKLTGAVDVKENASLTLTGMPSAQKQGYYSPVISTTEGINLEDNASFSVKNMGYLSSDIHAGTTAATINDAGKTDSPLFSSLMKGYNAVLRGSITGAQSTVNMINALWYSDGKSEAGALKAKGSRIELGDGKHFATLQVK---ELSADNTTFLMHTNNSRA-------DQLNVTDKLSGSNNSVLVDFL------NKPASEMSVTLITAPKGSDEKTFTAGTQQIGFSNVTPVISTEKTDDATKWVLTGYQTTADAGASKAAKDFMASGYKSFLTE------NNLNKRM----------------------GDLRDTQGDAGVWARIMNGTGSADGD-----YSDNYTHVQIGVDRKHGVDLFTGALLTYTDSNASSHA--FSGKNKSVGGGLYASALFNS-GAYFDLIGKYLHHDNQHTAN----ASLGTKDYSSHSWYAGAEVGYRYHLTK--VEPQIELVYGSVSGKAFSWEDRGMALSMKDKDYNPLIGRTGVDVGRAFSGDDWKITARAGLGYQFD-----------LLANGETVLQDA-EKDSRMLMTVGMNAEIKDNMRLGLELEKSAFGKNVDNAINANFRYVF 1364
7 -24.600IDP90436 gene: pmpH; Putative Outer Membrane Protein H [Chlamydia trachomatis D/UW-3/CX] CT_872 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  12  7...............................................................................................................................................................................................................................................................................................STSFCFLACLCSYSYGFASSPQVLTPNVTTPFKGDDVYL----NGDCAFVNVYAGAENGSIISANGDNLTITGQNHTLSFTDSQGPVLQNYAFISAGETLTLKDFSSLMFSKNVSCGEKGMISGKTVSISGAGEVIFWDNSV----GYSPLSIVPASTPTPPAPAPAPAASSSLSPTVSDARKGSIFSVETSLEISGVKKGVMFDNNAGNFGTVFRGNSNNNAGSGGSGSATTPSFTVKNCKGKV------TDNVASCGGGVVYKGTVLFKDNEGGRGNTAYDDLGILAATSRDQNTETGGGGGVICSPDDSVKFEGN---KGSIVFDYNFAKGRGGSILTKEFSLVADDSVVFSNNTAE-----KGGGAIYAPTIDISTNGGSILFERNRAAEGGAICVSEASSGSTGNLTLSASDGDIVFSGNMTSDRPGERSAARILSDGTTVSLNASGLSKLIFYDPVVQNNSAAGASTPSPSSSSMPGAVTINQSGNGSVIFTAESLTPSEKLQVLNSTSNFPGALTVSGGELVVTEGAT--------TTGTITATSGRVTLGSGASLSAVAGAANNNYTCTVS-KLGIDLESFLTPNYKTAILGADGTVTVNSGSTLDLVMESEAEVYD----------NPLFVGSLTIPFVTLSSSSASNGVTKNSVTINDADAAHYGYQGSWSADWTKPPLAPDAKGMVPPNTNNTLYLTWRPASNYGEYRLDPQRKGELVPNSLWVAGSALRTFTNGLKEHYVS-------------------------RDVGFVASLHALGDYILNYTQDDRDGFLARYGGFQATAASHYENGSIFGVAFGQLYGQTKSRMYYSKDAGNMTMLSCFGR-KGTETVMYWETAYGYHRMHTQYFNDKTQKFDHSKCHWHNNNYYAFVGAEHNF-ARDYELTGFMRFEMAGGWSSSTRETGSLTRYFARGSGHNMSL-PIGIVAHAVSHVRSPPSKLTLNMGYRPDIWRVTPHCNMEIANGVKTPIQGSPLARHAFFLEVHDTLYIHHFGRAYMNYSLDARRRQTAHFVSMGLNRIF 1016
8 -22.600IDP90328 gene: pmpB; Putative outer membrane protein B [Chlamydia trachomatis D/UW-3/CX] CT_413 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  11  432..........................................................................................................................ATAKGGGLYTDKNLSITNITGIIEIANNKATDVGGGAYVKGTLTCENSHRLKNSSDKQGGGIYGEDNITLSNLTGKTLFQENEGGGLFIKGTDKALTMTGLDSFCLINNTSEKHGGGAFVTKEISQTYTSDVETIPGITPVHGETVITGNKSTGGNG-GGVCTKRLALSNLQSISISGNSAAENGGGAHTCPDSFPTADTAEQPAAASAATSTPESAPVVSTALSTPSSSTVSSLTLLAASSQASPATSNKETQDPNADTDLLIDYVV----------DTTISKNTAKKGGGIYAKKAKMSRIDQLNISATEIGGGICCKESLELDALVSLSVTENLVGKEGGGLHAKTVNISNL---------KSGFSFSNNKANSSSTGVATTASAPAAAAASLQAAAAAVPSSPATPTYSGVVGGAIYGEKGNQAIDNNPSQSSLNVQGGAIYAKTSLSIGSSDAGTSYIFSGNSVSTGKSQTTGQIAGGAIYSPTVTLNCPATFSNNTASMATPKTSSEDGSSGNSIKDTIGGAIAGTAITLSGVSRFSGNTADLGAAIGTLANANTPSATSGSQNSITEKITLENGSFIFERNQANKNQNTSTHDGSAIYFTKDATIESLGSVLFTGNNVTATQASSATSGQNTNTANYGAAIFGDPGTTQSSQTDAILTLLASSGNITFSNNSLQNNQGDTPASKFCSIAGYVKLSLQAAKGKTISFFDCVHTSTKKIGSTQNVYETLDINKEENSNPYTGTIVFSSELHENKSQNAILHNGTLVLKEKTELHVVSEQKEGSKLIMKPGAVLSNQNIANGALVRIVATTSSASGGSGVSSSIPTNPKRISAAAPSGSAATTPTMSENKVFLTGDLTLIDPNGNFYQPLIKLPTNTSDVQVYDLTGTVYIPRDNHFYANSIVVKQGLINNM---------------------NNARFDDIAYNNFWVSGVGTFLAQQGTPLSEEFSYYSRGTSVAIDAKPRQDFILGAMVGKTKAIKKMHNYFHKGSEYSYQASVYGGKFL-PFLIQGVVSYGHHDTTTL----YPSIHERNKGDWEDLG--WLADLRISMDL---RITVYGELEYSSIRQKQFTEIDYDPRHFDDCAYRNLSL--VGCAVEGAIMNCNILMYNKLALAY---MPSINPVCKYRVSSNEAGQVICGVPTRTSARAEYSTQLYLGPFWTLYGNYTIDVGMYTLSQMTSCGARMIF 1751
9 -22.100IDP90434 gene: pmpF; Putative Outer Membrane Protein F [Chlamydia trachomatis D/UW-3/CX] CT_870 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  10  56..............................................................................................................................................................................................................................................................................................................................................................................................................QNIVLSNLQSNGTGACTISGNTQTQIFSNSVNTTADSGGAFDMVTTSFTASDNANLL-----CNNYCTHNKGGGAIRSGGPIRFLNNQDVLFYNNISAGAKYVGTGDHNEKNRGGALYATTITLTGNRTLAFINNMSGDCGGAISADTQISITDTVKGILFENNHTLNHIPYTQAE--NMARGGAICSRRDLCSISNNSGPIVFNYNQGGKGGAISATRCVIDNNKERIIFSNNSSLGWSQSSSASNGGAIQTTQGFTLRNNKGSIYFDSNTATHAGGAINCGYIDIRDNGPVY---LNNSAAWGAAFNLSKPRSATNYIHTGTGDIVFNNNVVFTLDGNLLGKRKLFHINNNEITPYTLSLGAKKDTRIYFYDLFQWERVKENTSNNPPSPTSRNTITVNPETEFSGAVVFSYNQMSSDIRTLMGKEHNYIKEAPTTLKFGTLAIEDDAELEIFNIPFTQNPTSLLALGSGATLTVGKHGKLNITNLGVILPIILKEGKSPPCIRVNPQDMTQNTGTGQTPSSTSSISTPMIIFNGRLSIVDENYESVYDSMDLSRGKAEQLILSIETTNDGQLDSNWQSSLNTSLLSPPHYGYQGLWTPNWITTTYTITLNNNSSAPTSATSIAEDPIRRGDLIANSLVHSGRNMTM------------LRSLLPDNSWFALQGAATTLFTKQQKRLSYHGYSSASKGYTVSSQASGAHGHKFLLSFSQSSDKMKEKETNNRLSSRYYLSALCFEHPMDRIALIGAAACNYHNMRSFYG------KKSSKGKFHSTTASLRCELRDSMPLRSIMLTPFAQALFSRTEPASIRESGDLARLFTLEQAHTAVVSPIGIKGAYSSD-TWPTLSWEMELAYQ----TLRPLLNTLLQNNGSWVTTNTPLAKHSFYGRGSHSLKFS-HLKLFANYQAEVATSTVSHYINAGGALVF 1034
10 -22.000IDP90383 gene: pmpA; Putative outer membrane protein A [Chlamydia trachomatis D/UW-3/CX] CT_412 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  40................................................................................................................................................................................................................................................................................................................................................................................................................GALIVYAPYSFAEMELAISGHKQGKDRDTFTMISSCPEGTNYIINRKLILSDFSLLNKVSSGGAFRNLAGKISFLGKNSSASIHFKHININGFGAGVFSESSIEFTDLRKLVAFGSESTGGIFTAKEDISFKNNHH--RNNITKGNGGVIQLQGDMKGSVSFVDQRGAIIFTNNQAVTSSSMKHSGRGGAISGDFAGSRILFLNNQQITFEGN------------SAVHGGAIYNKNGLVEFLGNAGPLAFKENTTIANGGAIYTSNFKANQQTSPILFSQNHANKKGGAIYAQYVNLEQNQDTIRFEKNTAK-------EGGGAITSSQCSITAHNTIIFSDNAAGDLGG--GAILLEGKKPSLTLIAHSGNIAFSGNTMLHITKKASLDRHNSILIKEAPYKIQLAANKNHSIHFFDPVMALSASSSPIQINAPEYETPFFSPKGMIVFSGANLLTSIFNQPVHLYNGTLSIENGAHLIVQSFKQTGGRISLSPGSSLALYTMNSFFHGNISSKEPLEINGLSFGVDISPSNLQAEIRAGNAPLRLSGSPSIHDPEGLFYENRDTAASPYQMEILLTSDKIVDIGAWHFSWQPNTINNTKQKILRASNRVGRAVPNSLWSTFLLLQTASHNLGDHLCNN--------------------RSLIPTSYFGVLIGGTGAEMSTH-SSEEESFISRLGATGTSIIRLTPSL--LSGGGSHMFGDSFVADLPEHITSEGIVQNVGLTHVWGPLTVNSTLCAALNAMVRICS------KDHTYGKWDTFGGTLGASYTFLEYDQTMRVFSFANIEATNILQRAFTETGYNPRSFSKTKLLNIAI--IGIGYEFCLGNSSFALLGKGSIGYSRDIKRENPSTLAHLMNDFAWTTNGCSVPTSAHTLANQLILRYKACSLYITAYTINREGKNLSNSLSCGGYVGF 975
11 -21.800IDP00097 gene: S1242; hypothetical protein S1242 NTL02SF1117 [Shigella flexneri 2a str. 2457T]  ali follow..  13  2....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QGKNTIVTTGDYSIGLLSQTSGNLNTDTIIRVNSDGSVTPSFSDGDDTFIVTAGNHAVGVLACASPGSACACVSSLDEESTADTGSNENNAIAKLDMAKGEITTHGTESYAAYANGTVVKAGDTLDYTNASVTLTDVDITTHGDNAHAIAARQGTVSFNQGEIYTTGPDAAIAKIYNGGTVTLKNTSAVAHQGSGIVLESSINGQEATVDILSGSSLRSANEILYHKDETSNVTITDSEVSSAADVFINNI--------KGHLTVDATNSKITGSANISTDDNTHTYLSLSDNSTWDIKADSTVSN-LTVDNSTVYISRA-------DGRDVEPTRLTITENYVGNNGVLHLRTELD--------------------DDNSATDKVVINGNTS--GTTRVKVTNAGGSGA-YTLNGIEIISVEGESNGEF------------------------------------------IKDSRIFAGA----------YEYSLTRGNTEATNKNWYLTNFVLRPEAGSYVANLAAANTLFVMRLNDRAGET--------------IDPVTEQERSSRLWLRQIGGHNAWRDSNGQLRTTSHRYVSQLGGD---SDSWRLGVMAGYARDYNLTHSSRSKGSVRGYSAGLYAT--FADDISKKGAQYSWFKNSVKGD-------ELAYESYSAKGATVSLEAGYGFALNTWIFQPQAQAIWMGVDHNAHTEANGSRI---ENDANNNIQTRLGFRTFIRTQ-HGDDFEPFVEMNWIHNSKD------------FAVSMNGVKVVSNLGEIKLGVNGNLNPAASVWGNVGVQLGNGYNDTAVMVGLKYKF 773
12 -21.300IDP90437 gene: pmpE; Putative Outer Membrane Protein E [Chlamydia trachomatis D/UW-3/CX] CT_869 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  12  10.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................IGNSLSGLAREVPSRIFLMPNSVPDPTKESLSNKISLTGDTHNLTNCYLDNLRYILAILQKTPNEGAAVTITDYLSFFDTQKEGIYFAKNLTPESGGAIGYASPNSPTVEIRDTIGPVIFENNTCCRLFTWRNPYAADKIREGGAIHAQNLYINHNHDVVG----KNFSYVQGGAISTANTFVVSENQSCFLFMDNICIQTNTAGKGGAIYAGTSNSFESNNCDLFFINNACCAGGAIFSPICSLTGNRGNIVFYNNRCFKNVETASSEASDGGAIKVTTRLDVTG---NRGRIFFSDNITKNYGGAIYAPVVTLVDNGPTYFINNIA-KGGAIYIDGTSNSKISADRHAIINANGTSTSANPPRRNAITVASSSGEILLGAG-TVNSADFHQRNLQTKTPAPLTLSNGFLCIEDHAQLTVNRFTQTGGVVSLGNGAVLSCYKGDSASNASITLKHIGLNLSSILKSGAEIPLLWVEPTNNSNNYTADTAATFSLSDVKLSLIDDYGNSPYESTDLNIDFSGLNVPHYGWQGLWTWGLPAGYVPSPKHRSPLIANTLWGNM-------LLATESLKNSAELTPSGHPFWGITGGGLGMMVYQDPRENHPGFHMRSSGYSAGMIAGQTHTFSLKFSQTYTKLNERYAKNNVSSKNYSCQGEMLFSLQEGFLLTKLVGLYSYHNCHHFYT------NLTSQGTFRSQTM---GAVFFDLPM--ILTAPFLGALGIYSSLSHFTEVGAYPRSFSTKTPLINVLVPIGVKGSFMNA-THRPQAWTVELAYQPVLYRQEPGIAAQLASKGIWFGSGSPSSRHAMSYKISQQTQPLSWLTLHFQYHGFYSSSTFCNYLNGEIALRF 964
13 -20.800IDP90331 gene: pmpI; Putative Outer Membrane Protein I [Chlamydia trachomatis D/UW-3/CX] CT_874 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  11  1....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MRPDHMNFCCLCAAILSSTAVLFGQDPLGETALLTKNPNHVVCTFFEDCTMESLFPALCAHASQDDPLYVLGNSYCWFVSKLHITDPKEALFKEKGDLS-----QNFRFLSFTDCSSKESSPSIIHQKNGQLSLRNNGSMSFCRNHAEGSGGAISADAFSLQHNYLFTAFEENSSKGNGGAIQAQTFSLSRNVSPISFARNRADLNGGAICCSNLICSGNVNPLFFTGNSATNGGAICCISDLNTSEKGSLSLACNQETLFASNSAKEKGGAIYAKHMVLRYNGPVSFINNSAKIGGAIAIQSGTSDQGLVRNAIYLEKDAILSSLEARNGDILSSKESPLPSSLQASVTSPTPATASPLVIQTSANRSVIFSSERLSEEEKTPDNLTSQLQQPIELKSGRLVLKDRAVLSAPSLSQDPQALLIMEAGTSLKTSSDLKLATLSIPLHSLDTEKSVTIHAPNLSIQKIFLSNSGDENF-PLLTLSKEQSHLHLPDGNLSSHFGTPKNYVPHPERQSTLVANTLWNTYSDM-------QAVQSMINTIAHGGAYLFGTWGSAVS---HDSSGKPIDNWHHRSLGYLFGISTHSLDDHSFCLAAGLGKSS---DSFITSTETTSYIATVQAQLATPLMKISAQACYNEHELKTK----YRSFSKEGFGSWHSVA--VSGEVCASIPI--SSFSIFSKLQGFSGTQDGFEESSGEIRSFSASSFRNISL--MGITFEKKSQKTRNYYYF--LGAYIQDLKRDVESGPVVLKNAVSWDAPMANLDSRAYMFRLTNQRALH-RLQTLLNVSYVLRGQSHSYSLDLGTTYRF 878
14 -20.500IDP93819 beta-barrel outer membrane protein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007855 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  12  103..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PAHKNGISEIDTVRNLAIIIPELFIELPESINIITKHTELPESINIITKHTNATSQVIHEVISAVSPSEITALATIIAVQAKAEAEKEILRRKQSTKDNVSSIKLLSNKTS--TQDTPTQKNDNKDNKKVDND--LSTEVDNALAEVG------------------------------------------NLGQIIVSNPISLLFAAEPLSSPESAVPAQVPKAA-ISHNPQAGSYLANQMAAQQMFITDNLQHRQRET------------------IDPITGKEKVSSMWLNTTGAKSRFNSGNGQLQTKSHRYAIQLGGT---DDKGILGITAGLGKSTSHSHSTKSDGSVNGYNLGLYSI--YADNQTQLGAQYGWNQVKAPAGIT--------GANYKSYVFTTALESGYKFQLLEKAIQPKAKVSWQRMSGVQDKGSAGAQV---ILEENNVVATQLGMRTSLELDIDTLSLSPSFEANWIHNGNN------------KGVWLESTNINNNIADLKLGIEANIDSNLQLWTHLGHQFGGHNSDTQAMLGANYRF 635
15 -11.600IDP06016 putative metalloproteinase TLN4 [Toxoplasma gondii] ADX66727 [Toxoplasma gondii]  ali follow..  14 1441..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TSSQDGQRSVKANSPKPLNAAGSVGTAGKVEGKSRKVASRVDTPGNERRTYASLFGTQNVLRSSRIQSSPIFSLGDDADAL-----------SLIQVEARVSTSNSKPKAVLGARRGDGQSPTVASPSGAAPKRPAPPAGPRDKSGEASETTGTEGMEVTEIASDVEGQAEEGDVPIEFLPLARQITPLERCAADQNAADAKRIVDPVEARRSILENL---AKLSSKSSLFSLSPSSHPSPPLWLASESCSIRTSTISRAEEVCGAWRESAPEAVLIVSPEQPPAGMPSLPPTL-----G-----DAEPAAAAVPVSPPGAETGVPLVPESPGS-PAAAGRQAAMKAPTESEASAATEGDHPRVGTSAEARTRQLPTA---EQQTLEQRKALLEARLKQRLDAQYGTRPTTIF----------NTWLGP---------HKRGFLQSGGTGAVSAVSGRSSTATRT-SRRLPSALHQAADPLAFK-TLKWRNAFGST--------AGDSTAPNLGLAEDKNLRLVE---NVTVASGASLG----------SRDQTAIAH..... 1998
16 -10.200IDP90955 Hypothetical protein PA14_07500 [Pseudomonas aeruginosa UCBPP-PA14]  ali follow..  15  657............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ISIDGEDCVLTIARDITERQLMQEKLQQAATEGVMITDTRQRITAVNRAITGEQEALGRSPSLLSSGQHDSSFYLAMWNQLERDGHWQGEIWNRRKTGELYPEWLTISAVPQGEITHFVGVFADISTLKYAQARLDYQAHHDPLTGLPN-----RLLFESRLNHALDEAREESRPGAVLFIDLDRFKHIND-----------SLGHPIGDLLLKAIAERLRDQLLGGDEFI-EGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEY--YLATERMALETELRRALERDELQLYYSLESGLLVGEALVRWYHPLFGISPFIPLA-VNLAGAQLGQPQLIERLEQLLEQSGLEPSRLQLEITESFIMNQTEEALA-RLGVQLAIDD-TGYSSLSY---KRLPLDILKIDKDAAITRA---IALGRSMQLTVIAEG----------VETEGQQSF 1203
17 -9.270IDP06002 amine oxidase, flavin-containing domain-containing protein [Toxoplasma gondii ME49] EEA99631 [Toxoplasma gondii ME49]  ali follow..  14  496....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................HTSSSGGVTAGSELCPCVCGASEEEASSLNGRRVPVLKAGTVE---------------TVSLEPDDGR---TREKKRRNRIPLIASSAFPAYYPLGEALLRSSPGLEGDDAAVSLGVSKSPPA--SRQGGRFASACCTV--RKRRVRRQPQDRGEEEFERTYHAESGTLEGVQREKRSGRRKAHASSLWRD------REENNGSETGEKSDAGG---G-DAR-------GQMSGFSSPS---DTRDALSNADGSHVSLFTGDGRRNLSGDTSASKGGHELPSSSSLPSSSV-PSLRLHEHSVVRPVFTDSGCRLEEECLPVSPFPQ-----------GEEGGSACKPLGSEKRSRKGSPSG--------------------GWEHC-GP-SPTREEDAAGRSKFTLTGELSAAVSASTEKG-SCRSSNACALSLGYVGDLREQSVSALRNFPFEVA. 974

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.