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Query: [S] COG4984 Predicted membrane protein, from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQNTTLFHLSWRKYLTLLFLLLGTGFFASGVITWIAANWDYFSRFEKLYGVQSLFGVSILLSVFFYYYEAKKKQVTSVLPLVFAFLAAVLLGAIFALIGQTYQTGADPWELFAIWSICQIPFLLLFPNVASALLLLVTANVALSLAISLLGDIVHMTIFLNMLFLVCYEYFGERLRDQNWRILPKIALFILVFAFGWALIVNNSVLLSWLLSAGLVYYYKERRFDFLNLIVLFFYLVVSICTKVLLSSGEDFLSDIFLVTILAFGGTIGAIITLIKWFKWHNPTASRVTWHIYPLFILLIIFCTGLLLITLFFSFGLEDEQDLIYPSILFLIIALVMHFNQKEKADWFDIAIDMFMATGFILYFIFFLFDGENDLYLALMAILSVFLYQLRSSNWLRFLIASLFIIAFLVYIGFFDLRWYAYYEEHLGQFVLSAQQWIILGGLLLYYFFSLSEERPYTIKLLPIAWAMLLVGLAMNLDIFNRWTFLDTAQQTPEMSDLNDWFHVITGYFFTALTSDTWLIKSLHLLISITPIIFFVLISRRFELTKFLYASVLLTLLALCLGFIAVNETLACISLLLLAYLSVSRVLFALALLGVIMNLSYYYYLLSIPLLHKSFLLMGVGIVLALVTFVLLRYNKAPQATLQAESHNTFQPQLast
1 -6.030IDP04526 putative inner membrane protein [Salmonella typhimurium LT2] STM1637_1_516 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  10  25...........................................................................................................................................................................................................................................CLIVIFSVLIRLLFLTDRYLWCDEASSVLISRHSVDNLLFHAAFDVHP----------PLYYLLLLWLFGILTVVLVIALTRWNERTALLAGWFAALMPMAVHYSQE--TRMYALMGMLTLAAALAL--MMWIKTPTHNRYLVAYALLMTFSFY------THYFTLFTLIAHWIAVTILSCQSHKTACYLKLPGWWFANLAIAVAYLPWLPVLFNLLTHLAQLRAGNDIGW---------------------------PPVTWRDLPAMYWHFFTGNNGQGFPSFILWLAVGGFIGTVGRISLCNGEYERYQLILFCNLVIPVMLVFIISWWMPLFIDRYFFFSSLS-----IPPLLAVLLTRAK-----------VCGFWFILFTLLFGYGSYHNNPEHIDEFKPLVNYINTRHQPN 401
2 -5.910IDP04349 putative inner membrane protein [Salmonella typhimurium LT2] STM0557_1_550 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  10  11.................................................................................................................................................................................................................................KMVIAILIVFSLVYSIGFITPMNSDD----------YTYALRELSLSSVKMHYLGWSGR-------VSDTISTSLLKFFSPHIYNAINSA-------ALTLMVLCWTMIPATLTKSSPSPYVMIFLFFLYFVANPALGQTNFWLVGSANYLWTNMFIAIYILISIYLSNGKKSNLILFVYAISSIFAGCSN-----------------NTSLVVVLISVAYFFIMNRNKYLLIGVFGSAIGAGVLL------GNLSRASTIQDWYNQPLAWRVLEHFSERLPSAMGAY----------WQVYIAFIILLISVVLSRNSSSKLMFGSFLFMLGAIAANVA-----------FLASPAMPSRALNGALCFMILSISFVAHSAFTKFNKASIYLSVTTYAMAFLYFIP....................... 352
3 -5.830IDP05580 putative lipoprotein [Bacillus anthracis str. Ames] BA_0936 [Bacillus anthracis str. Ames]  ali follow..  13  1..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MLKKLGILVLGSAVALSLVACGDSTKEASNEKKEEPKQEAKKE 43
4 -5.800IDP91390 Lipid A core - O-antigen ligase [Vibrio vulnificus CMCP6] VV1_1426 [Vibrio vulnificus CMCP6]  ali follow..  13  6.....................................................................................................................................................................................................................................................................................VSGTQLAEPKAQVPLNKKFLLALAI---LFLVAMHFFMPNPGGAGLALSFNPTTWIAFSF------------------------------------------VFALGCYQLASQQYLRYSKLTIGLFVSCLILTVPL----FYANSHYMQSVSRLVGLWAGFGFFVLLQQFSFSNKYKQR------LLWLVVLAVVIESFIGYYQFLWLKPGNWMGYDTLSNR----PYGIFQQPNVMA--------FLATGLIISGYLLARQPHKYNKHLSEITLLYLIPLLTVPLGWLAAMIATLLLLPYLYRFGTKIRFWGWLGSIILGLAYTFPQALDMLIEK--FTGYGY-FESARQHLLNKQYPPALPAMDHPHNEL... 351
5 -5.660IDP00648 hemolysin III, putative SACOL2160 [Staphylococcus aureus subsp. aureus COL]  ali follow..  8  39.....................................................................................................................................................................................................................................................................................................................................................................................................................................................LLTLLVLPYAAVHSYIAHGTLASVSMSIYVISIFMMFISSTIYHSMQNETPHKYILRIIDHSMIYVAISGTYTPILLTVVGGWIGWTVFILLWGTTLWGILYKSIAVKVNQKLSLIVYLVMGWVGIILLPIIFIRTSWIFILFIFLGGVSYTIGAWFYAQKNRPYFHM-----IWHIFIVIASLLHLIAILYFM...................... 227
6 -5.490IDP91333 hypothetical protein VV2_0175 [Vibrio vulnificus CMCP6] VV2_0175 [Vibrio vulnificus CMCP6]  ali follow..  15  1.........................................MSKTAKLNNEEKLVKKALEIGGKMAKMQGFDLPQSPQPVRVKAVYLFLVDAKQIAPLPDSKLDGANIKHRLALWIHAALP.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 80
7 -5.390IDP01691 gene: tolR; tolR protein [Coxiella burnetii RSA 493] CBU_1575 [Coxiella burnetii RSA 493]  ali follow..  18  1.....................................................................................................................................................................................................................................................................................MRKRPLAEINVVPYIDVMLVLLVIF----MITAPLLTQGVN............................................................................................................................................................................................................................................................................................................................................... 37
8 -5.390IDP91896 hypothetical protein SpneCM_02825 [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100002825 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  19  5...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RYFFDTILIILLLISTIFCVSPVFIKLDILGTPSHAILTFVLAIPLFYI-LSQCLHTLLLLVSSIFCKLRPIYFYFIFVIIIGARKYYRILFHQLLFKFYYFLYFTTLISYYFFFTFVYDKPLLLPLIPFS....... 153
9 -5.350IDP06321 ABC transporter permease [Streptococcus pneumoniae TIGR4] NP_345398 [Streptococcus pneumoniae TIGR4]  ali follow..  11  1.................................................................................................................................................................................................................................................................................MFRLTNKLAVSNLIKNRKLYYPFALAVLLA-----VTITYLFYSLTFNPKI------------IRGGTTIQATLGFGMFVVTLASAIIVLYANSFVMKNRSKELGIYGMLGLEKRHLISMTFKELVVFGILTVGAGIGIG---------------------ALFDKLIFAFLLKLMKLKVELVATFQMNVVIAVLVVFGLIFLGLMFLNALRIARMNALQLSREKAS----------EKRGRFLPLQTILGSISLGIGYYLALTVTDPLTALTTFFLAVLLVIFGTYLLFNA-------GITVFLQILKKNKKYYYISVSNLIFRMKKNAVGLATIAILSTMVLVTMSAATSIFNSAESFKKVLNPHDFGVSGQNV.... 329
10 -5.140IDP06122 gene: exbD_2; biopolymer transport EXBD protein [Helicobacter pylori J99] NP_223977 [Helicobacter pylori J99]  ali follow..  20  3......................................................................................................................................................................................................................................................................................SIRRGDGLNVVPFIDIMLVLLAIV-----LSISTFIAQGKIKVSL.......................................................................................................................................................................................................................................................................................................................................... 42
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;