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Query: [S] COG5427 Uncharacterized membrane protein, from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEFGVVARWWVFFGVLLVAGLPVASRLLPDAPDRGASVAMPLSLVVVTLATLWVGQVAYGQLVVGGVFVAVLAAAAWLARGGVEIPRKPLLEVVGVFTVAFVFLIVVRAWADGVQPAGGEQFLDFGLLQALDRAGQLPPRDMWFAGERVVYYYGGQLMASIGAHLTDTAPRFAYEPALAGVYAMGCTAAYGLASTIAAGNGGESRPVGVPTAIGGAGVALAVVVLATGVNWLVVAVPAAAAAVVVTRPRRVRAGVLGAFAFGFASNLGPVIRLLAARVDVVRAAVVAAGINADRRPAITPEAFDMWHASRFMETGLNEFPLFAYLNGDLHAHMVSVPVLFVAVAVGVAYYRTPARQRRRRWALLWGGFPVAGAAILTVNTWSLPTVFGVAALAVALADPAPATLLPTGVQRWTRRESAVGQSVQRVLLAVGVAAVGGVLAVVIAWPFVQNVLLAGASNQHLAVLPVPSQAGALVFVHGLFLAAFGAYFVSRVATSVAGWVVAAAAAGAAVAVAVAVGPVVGGVGITAVVLVGPVLGAAWWLRRRNAAGVECVLVAAGAGLVVLVEYVYLADAASYERFNTVFKVYAQVWALWSVAGGVALAGVSERRASTGGLGAVFVVGLVVAASVYGGLAVTTHAANADDASLDALEYAGNAHPGEAAAARWLGDRRRGTRIVAAPGVDPYTWQNPAASLSGVPTVAGWAHAANYHSQAAWEQRVDDIGVVYETTDAASRAAILEKYDVTYVWVGPVERARYEIPDLSADPGIEPVHRTPAVTIYRVTDDELVAPRSGPITVTTTPQAATATAPGAQTARSPARFVTVTSSASTAVTSSQWGTKLRFSLast
1 -13.500IDP04526 putative inner membrane protein [Salmonella typhimurium LT2] STM1637_1_516 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  22..............................................................................................YHVCLIVIFSVLIRLLFLTDRYLWCDEASSVLILLFHAAFDVHPP-----------YY----LLLHDWMILWG-DSIAAVRSLSLLFGILTVVLVIALTRWLANER----------------------------------------------------TALLAGWFAALM-------------------------------------------------------PMAVHYSQETRMYALMGMLTLAAALALMMWIKTPTHNRY------LVAYALLMTFSFYTHYFTLFTLIAHWIAVTILSCQSHK---------------------TACYLKLPGWWFANLAIAVAYLPWLPVLFNLLTHLAQLRAGNDIGWIPP-------------------------VTWRDLPAMYWHFFTGNNGQGFPSFILWLAVGGFIGTVGRISLCNGEYERYQLILFCNLVIPVMLVFIISWWMP------------LFIDRYFFFSSLSIPPLLAVLLTRAKKAVCGFWFILFTLLFGYGS-------------------YHNNPEHIDEFKPLVNYINTRHQPNDAVVVSKMFDYLSYVYYNKRDYRTFLYTPPNAHGTSGRPNAYGFGSLFYAQADQTYIDTLTTLSKSYHVWLVSGGNFSQDYPLPSEWQNIAKFR--SGRFQVQLFVIPTQQARQMQ.................................................... 516
2 -11.400IDP04349 putative inner membrane protein [Salmonella typhimurium LT2] STM0557_1_550 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  3...................................................................................RKMVNNRLKMVIAILIVFSLVYSIGFITP----MNSD---DYTYALRE------------SLSSVKMHYWSGRVVSDTISTSLKFFSPHIYNAINSAALTLMVLCWTMIPATLTKSSPS-----------------------------------------------PYVMIFLFFLYFVANPALGQTN---------------------------------FWLVG-----------SANYLWT-----------NMFIAIYILISIYLSNGKKSNLILFVYAISSIFAGC---SNENTSLVVVLISVAYFFIMNRNKYLLIG------------------------------------------------------------------FGSAIGAGVLLLAPGNLSRASTIQDWYNQPLAWRVLEHFSERLPSAMGAYWQVYIAFIILLISVVLSRNSSSKLMFGSFLFMLGAIAANVAFLASPAMPS----------RALNGALCFMILSISFVAHSAFTKFNKASIYLSVTTYAMAFLYFIPSYILYYSSIKSISKQTEIREEIIDRAKHNKQDQAI---PDYYFPPVLHAGPSLDTFNSEAMSRYYGIDLKI-------------TAPGFFDYSRAFNFKPLNINAKICNNVYIKSLWIYKQQMGIKTFVIFEFNKNPADSLDENTAMFISFKTK.......................................................... 491
3 -9.110IDP95096 putative recombination protein with metallo-hydrolase domain [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002918703 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  12  8...........FTAILTKKACPAASAIVWNAPRKPEFAARTPAPLCVTLGCAIIAMLPLLWLPVLPGPCSLAGASALALALIRLHGRAVAGVAMTLLLVVWGVLSAHQALWPTRHLTGAIRQAEVILSET-VTLYGELAPAPACAGQHWL-------MTLRLRPVHGQLNDGGFDALAQHRPLSGGIVAASALDARLRARYLTSLTRRLQTYPWRAVMLGLGMGERLSLPTEIKVLMQNTGTSHLMAISGLHIALAASLIMLLLRGVQYILPGRWIGWRLPLVA------------------------------GLAGAVGYAWLTG------MQPPALCLGLAVCCALRLSGQRWTAWQVWLCCLGAILVADPLAVLSQSLWLSAFAVAGLIFWFQWLPLPAGRWRWPWKTIIALVHLQAGVTLLLLPLQGISLTSMAANLLAVPLVTLLAVPLILTAMLVHLSGPELVESLLWLAADRVLALLFWGLRRLPDGWLMLDTRWLWISILPWLLVMGWRFQSWRHSPALCLSVLFLLTRPFSRQPPADEWRVTMLDVGQGLAMVIERALLYDTGPAWPQGDSGQQVIIPWLRWHHLQLQGIMLSHEHLDHRGGLDSVLQAWPQAWVRSPLGWAHHLPCHRGERWQWQGLNFQALWPLPGST------AKGNNHSCVVRIDDGRSS-----ILLTG----IERQAEQAMISRYWRHLTSTLIQVPHHGSNTSSSALLVRRVDGAAALASASRYNAWRMPSYKVVQR----YRQRGYRWFATPQQ.......................................................... 770
4 -8.310IDP91219 RecName: Full=Phosphatidylglycerol lysyltransferase; AltName: Full=Lysylphosphatidylglycerol synthase; Short=LPG synthase; AltName: Full=Multiple peptide resistance factor SAOUHSC_01359 [Staphylococcus aureus subsp. aureus NCTC 8325]  ali follow..  8.KIFSILKITFATALFIFVAITLYREL------SGINFKD------------TLVEFSKINRMSLVLLFIGGGAS--------------------LVILSMYDVILSRALKMDI---SLGKVLRVSYIINALNAIV-------FIGAGVRAMVYKNY-KKKLVHFISL-------ILISMLTGLSLLSLLIVFHVFDASLILDKITWVRWVLYVVSFFLPLFIIYSMVRPPDKNNRFVGLYCTLVSCVEWLAAAVV------------------------------------------------LYFCGVIVDAHVSFMSFIAFIIAALSGLVSFIPGGFGAFDLVVLLGFKTLGVPEEKVLLMLLLYRFAY--------YFVPVIIALILSSFEFGTSAKKYIEGSKYFIPAKDVTSFLMSYQKDIIAKIPSLSLAILVFFTSMIFFVNNLTIVYDALYDGNHLTYYILLAIHTSACLLLLLNVVGIYKQSRR---AIIFAMISILLITVATFFTYASYILITWLAIIFVLLIVAFRRARRLKRPVRMRNIVAMLLFSLFILYVNHIFIAGTLYALDIYTIEMHTSVLRYYFWLTI--------------------LIIAIIIGMIAWLFDYQFSKVRISSKIEDCEEIINQYGGNYLSHLIYSGDK----QFFTNENKTAYRYKASSLVVLGDPLGDENAFDELLEAFYNYAEYLGYDVIFYQVTD--QHMPLYHNFGNQFFKLGEIDLTQFSTSGKKRRGFRATLNKFDELNIFEIIEPPFSTEFINELQHVSDL----LDNRQEMHFSVGEFNEEYLSKAPIGVMRNEENEVIAFC 717
5 -8.280IDP91592 gene: fmtC; oxacillin resistance-related FmtC protein [Staphylococcus aureus subsp. aureus Mu50] SAV1360 [Staphylococcus aureus subsp. aureus Mu50]  ali follow..  8.KIFSILKITFATALFIFVAITLYREL------SGINFKD------------TLVEFSKINRMSLVLLFIGGGAS--------------------LVILSMYDVILSRALKMDI---SLGKVLRVSYIINALNAIV-------FIGAGVRAMVYKNY-KKKLVHFISL-------ILISMLTGLSLLSLLIVFHVFDASLILDKITWVRWVLYVVSFFLPLFIIYSMVRPPDKNNRFVGLYCTLVSCVEWLAAAVV------------------------------------------------LYFCGVIVDAHVSFMSFIAFIIAALSGLVSFIPGGFGAFDLVVLLGFKTLGVPEEKVLLMLLLYRFAY--------YFVPVIIALILSSFEFGTSAKKYIEGSKYFIPAKDVTSFLMSYQKDIIAKIPSLSLAILVFFTSMIFFVNNLTIVYDALYDGNHLTYYILLAIHTSACLLLLLNVVGIYKQSRR---AIIFAMISILLITVATFFTYASYILITWLAIIFVLLIVAFRRARRLKRPVRMRNIVAMLLFSLFILYVNHIFIAGTLYALDIYTIEMHTSVLRYYFWLTI--------------------LIIAIIIGMIAWLFDYQFSKVRISSKIEDCEEIINQYGGNYLSHLIYSGDK----QFFTNENKTAYRYKASSLVVLGDPLGDENAFDELLEAFYNYAEYLGYDVIFYQVTD--QHMPLYHNFGNQFFKLGEIDLTQFSTSGKKRRGFRATLNKFDELNIFEIIEPPFSTEFINELQHVSDL-----DNRQEMHFSVGQFNEEYLSKAPIGVMRNEENEVIAFC 717
6 -7.620IDP91390 Lipid A core - O-antigen ligase [Vibrio vulnificus CMCP6] VV1_1426 [Vibrio vulnificus CMCP6]  ali follow..  23..........KFLLALAILFLVAMHFFMPNPGGAGLALSFIAFSFVFALGCYQLASQQYLRYSKLTIGLFVSCLILTVPLFYANSHYMQSVSRLVGLWAGFGFFVLLQQF---------------------------------FSNKYKQRLLWLVVLAVVIESFIGYYQFLWLIFQQPNVMASFLATGLIISGYLLARQPHKYNKHL---------SEITLLYLIPLLTVPLIVVLASRTGWLAAMIATLLLLPYLYRFGTKIRFWGWLGSIILGLSLSGALLQSTESNLAGQKTNLESARAYTFPQA----DMLIEKPFTGYGYGNFHPHLLYW-LLGIFLAAILVLNRIYSAKKGTRLAMFALFVPIVLHSQL-----EYPFYHSAAHWLIFI............................................................................................................................................................................................................................................................................................................................................................................................................................................................ 416
7 -7.550IDP92687 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus str. Newman] YP_001331559 [Staphylococcus aureus subsp. aureus str. Newman]  ali follow..  1.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MINRDNKKAITKKGMISNRLNKFSI------RKYT--GTASILVGTTLIFGLGNQEAKAAENTSTENAKQDDA--TSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNNTNNDVTTKPSTSEPSTSEIQTKP 183
8 -7.520IDP91548 Protein of unknown function DUF472 [Enterococcus faecium DO] EfaeDRAFT_1579 [Enterococcus faecium DO]  ali follow..  10  14.EHSLILKLIFFGSVLVFVANQVANIA------NGMSWQD------------IWQRMGQQSRMTILLMILAGLLG--------------------VTPMLLYDWVTIRVLEKQG-KMERKEFLLAAWVTNTINNLA-------VVGASLRASFYGKQ---------TNRKMVLATVSKVALFMLTGLSVWSFLTFIDVFFIQSESIFRSYWIWLFGGSFLAPVIFFFAYLKRKTLFFEFYPKGLLGLLLASFGQWTGALAVFLIIGK-------------------------------------------LMRIDISMLSIYPFMIATLIGMLTMVPGGMGTFDVLMILGMSQLSVRQDVAVVWLLYYRLFY--------YVLPFMTGLLLFI-----------THTGVKINRFLDNIPRLFFQKVAHIVLVSAVYFAGIMMVLLSTITNLSAISRLFQVLLPFSFNFLDQTVNLLVGFLLLGLARALSVKVKKA-------------------------------LPTIALLSFGILNTITRTLSWQLILVYVLILLAVWLSRKEFYRTKFVYSWGAIIFDASLFGFLFIVYAIAGYHSGRLFPSDDVWFSGLIGLGISLLALVALYQYLAEDTTKLGSEYEKDRFDRLLETYGGTATSHQLYYQEDDQDQVVFG------YQIKGNKCFVLGDPVGNPKMMRAATNQFMKQADCLGYQLAFYKISE--SYVVMLHELGFHFTKVGEVDLATEDLSRLSQQLEYQRLMKEG.................................................................... 659
9 -7.280IDP91949 pneumococcal histidine triad protein E [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007099 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  10  1...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MKFSKKYIAAGSAVIVSLSLCAYALNQHRSQENKDNNRVSYVDGSQSSQKSENLTPDQVS--KEGIQAEQIVIKITDQGY--------------VTG-DHYHYYNGKVPYDALFSEELLMKDPNYQLKDADIVNEVKGGYII-VARSQGRYTTNDGYVFNPADIIEDTGNAYIVPIPKSDLSASELAAAKAHLAGKNMQPSQLSYSSTASDNNTQSVAKGSTSKPANKS........ 265
10 -7.230IDP91594 virulence factor MprF BAS1375 [Bacillus anthracis str. Sterne]  ali follow..  7.......................................................................................RFLQIGKIIFPFVVLTIVFFQAKK---------AGISFLEAINTIKNIPT------------------GVFLAITLGAFAVSTMFFYDYTLNGFIGFGGLVGAGVRTMLYRPYIKENGKLIKSIAWMTTAFINGLAILSFLGLIGILDTSFILHEKPWLWPVLIFFALFVPIYIGFSKLKNRKTKQAEGQDEGEEEKNPTVLYSLVSLVEWVSAGIVMYVILILFGIDIEFQKFLGYVIAALAGVVSLVPGGLGSFDLVFLTGLGQYGIDTGVLLPAMLLYRLVY--------YILPFCLGLIFAAFAIKKFEDKPFIAPALETTGVIWTLQRDFLGKLGSWASAALTVFAGLMVILSTILPTSINRAHALHILAPKHLIQFSFSLSLTFGILLLILSRGIYYGTKR--SYYMTIISLIGAAVFNTLKGIDIEETFILLIVLAVLYMLRKRFVREKMEVSLSDIVKVFIFLLITLYLYKNLGILFAGAKEAFKPDFVVRNITQVKRSALAAAF-----------------FVPTFLLIGSLIANRYRNEFPGQPANDKRLQNFLDEHGGNVLSHLGFLGDK----QFFFSSDGKAFSITGKRLVVLGDPIGDPSSYRTVLQEFLAEADRFGYICVFYQIES--KWMSLYHDFGYNFFKLGEVDLNTFTITGKKRAGMRATFNRFEREGYFSIHQPPFSNELFEELRKVSDA----LGGKKEKSFSLGYFDHEYINRAPIATLSDADGKIIAFT 735

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.