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Query: [S] COG5505 Predicted integral membrane protein, from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MHSLISSDDVWVLWGFIAVWAAVSIGLEQRFKWASAVSGAIIALAGAMVFTNVGVLPVESPVYDTVWSYVVPLAIPLLLFQINVRQIFKESRRLLFIFLISSVGTVLGSILAFFLLKQHIPYLDKIGGMISASYIGGGVNFAAMAAKFETPGEYVSATVVADNFMMALLFFILISIPALKWFQRHYAMPFEEKVKADGNSGNSAESYWKRKDISLKDIAFNAGAAFALVAVSMKVSGYFKSIFSHPLLTGTLGDQYLVLTSLTVLIIFLFPRFFERLNGSQELGTFLIYLFFVVIGIPADLRLIVTNAPLILLFVFIIAISNLAVSLAAGKLFRVRLEEILLAVNATVGGPTTAAAMAIAKGWRELVAPIMLVGTLGYLIGNYVGTFMGNWFSSFLLast
1 -7.910IDP91361 NhaP-type Na+/H+ and K+/H+ antiporters [Vibrio vulnificus CMCP6] VV1_2840 [Vibrio vulnificus CMCP6]  ali follow..  9  10..........LLFVIIALFIGALVRHLLKGSQ----VPYTVALLILGIAIGLAHRGNAFTDNYHLFLFLFLPTLIFESAFAMEVHLFRRMFTQIVI---LAVPGLMLAIWLTAELVAWVLPEHWQALCLMFGALISATVAVVALLKEVSSRKRLETLILLNDGTAIVFFSLFYGWV----------------LMEFSNPGEAITAPPWQAVAQFFVVVFVGLAVGLILGGLCILWIDRVFNDPMIEISLTIAAAYSAVVAVVTLAIMFASVGRTRISPEVAGMAHMANTLIFLLVGILVAIRVPLDDKEAWLALFVLYLGIMAIRACSITVFMGITYEKAVVLCWGGLRGAVSLALAMTVASSDIIPKQ-VLFLCAGIVVLTILGSTMGHVLKWL. 427
2 -5.380IDP00754 gene: spa; immunoglobulin G binding protein A precursor SACOL0095 [Staphylococcus aureus subsp. aureus COL]  ali follow..  11  1......................................................................................MKKKNIYSIRKLGVGIASVTLGTLL----------------------ISGGVTPAANAAQHDEAQQNAFYQVLNMPNLNADQRNGFIQSLKDDPSQSANVLGEAQKLNDSQAPKADAQQNNFNKDQQSAFY................................................................................................................................................................................... 109
3 -4.930IDP91038 hypothetical protein SAHV_2481 [Staphylococcus aureus subsp. aureus Mu3] SAHV_2481 [Staphylococcus aureus subsp. aureus Mu3]  ali follow..  8  10..................................................KRVDFLSNKLNKYS-------------------IRK-----------FTVGTASILIGSLM--YLGTQQEAEAAENNIENPTTLKDNVQSKEVKIEEVTNKDTAPQGVEAKSEVTSN-------TIEHEASVKAEDISKKEDTPKEVANVAEVQPKSSVTHNAEAPKVRKARSVDEGSFDITRDSKNVVESTPITIQGKEHFEGYGSVDIQKNPTDLGVSEVTRFNVESNGLIGA-------LQLKNKIDFSKDFNFKVRV------------------------------NNHQSNTTGADGWGFLFSKGNAEEYLTNGGILGDKG--LVNSGGFKI........ 274
4 -4.550IDP04708 30S ribosomal protein S19 [Bacillus anthracis str. Sterne] BAS0114 [Bacillus anthracis str. Sterne]  ali follow..  10  29.................................................................................................................................................................................................................................................................................................................................................QVVKTWSRRSTIFPQFIGHTIAVYDGRKHVPVYVTEDMVGHKLGEFA............ 75
5 -4.390IDP90131 cowpox A-type inclusion protein [Monkeypox virus] MPXV_ZAI1979_005_144 [Monkeypox virus]  ali follow..  11  9...................................................................................................................................................YNLESQILKYRTTADVIMKSMYKLEIESLKRELAEYRRGNNGSHSDCKYYDEEAREEVS.............................................................................................................................................................................................. 67
6 -4.210IDP90393 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_567 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  8  1MFRKIKKKRAFLLSELLIACV-------------------LISLLLGSLGYWTRRIWISHKEKEHVYRIFLNESKTYRFLRGTFLSTIAMEAQEELVFSF........................................................................................................................................................................................................................................................................................................ 81
7 -3.870IDP91946 integral membrane protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100004617 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  12  1...........................................................................................................................................................................................................................MSISQRTTKLILATCLAYLLAYFLN---LSSAVSAGIIALLSLSDTRRSTLKLARNRLFSM--LALAIGVLAFHLSGFHI-----------------WSLGLYLAFYVPLAYKMGWE-------IGITPSTVLVSHLLVQESTSPDLLVNEFLLFAIGTGFALLVNLYM........ 141
8 -3.770IDP06405 gene: ORF57; ORF57 [Human herpesvirus 8] YP_001129410 [Human herpesvirus 8]  ali follow..  9  269CRRETAAAGGLQTLGAFVQMTWAQTVVRHGGWFDEKDIDIILDTAIFVFVTRFRLLHLSCVFDKQSELALIKQVAYLVAMGNRLVEACNLLGEVKLNFRGGLLLAFVLTIPGMQSRRSISARGQELFRTLLEYYRPGDV-MGLLNVIVMEHAAATRAAMGSAKFNKGLFFYPL............................................................................................................................................................................................................................... 454
9 -3.660IDP92565 nonstructural protein 1, partial [Dengue virus 2] AAA66406 [Dengue virus 2]  ali follow..  11  65....................................................MEIRPLKEKEENLVNSLVTNFSLGVLGMALFLEEMLRGTKHAILLVAVSFVTLITGNMSFRDLGRVMV-----MVGATMTDDIGMGVTYLALLAAFKVRPTFAAGLLSKELMMTTIGIVLLSQST----------------------------------PETILELTDALALGMMVLKM--------------VRKMEKYQLAVTIMAILCVPNAVIL-----------QNAWKVSCTILAVVSVSPLFLTSSQQKADWIPLALTIKGLNPTAIFLTTLSRTNKKRSWPLNEAIMAVGMVSILASSLLKNDIPMTGPLVAGGLL.................... 340
10 -3.610IDP95121 pullulanase-specific type II secretion system component J [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002917867 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  13  1...MITRMRGFTLIETLLALA-------------------ILAVLSAAAVMVLQNVIRADGLTREKSQQIAALQRAFRQIADDVTHII.................................................................................................................................................................................................................................................................................................................... 66
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Dunbrack RL Jr, Dunker K, Godzik A. Protein structure prediction in biology and medicine. Pac Symp Biocomput. 2000;(12):93-4.