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Query: [S] COG5650 Predicted integral membrane protein, from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDQKLDQQKVDRVSPGDSEPVARDFINAIGGRFGRFAQVGTQRFWTPLRVLITTSLVFLAMGFLTKANCIQGSRGTDGVVSLNWSGSRQYTSACYNDIVPLYGGRGIDAPGFPYAFSWQEGDLTRYMEYPVLGGIFQWICGIITRFLYPVVDVIPFHTLPESGLYFIVTALALAFFWVLVIRMMVELTGNRVWDTVLVAASPLVAVHAFTNWDTPAIAAVIGAMLAVKRGNPLVAGVLIGAGTAFKLWPLYLLGAYLVLAVKNKNLKPFITMAAAAAVTWLVVNVPVMIAYPKAWNEFLRLNRERGAEWTTIYQVIDRNLPINLNDPVLLNVLSFGLFGASCVAILILGLKVQRTPRVAELAFLIVAAFLLFNKVWSPQYSLWLVPLAVLAFPQWKVLFPWMVTDAMVWPILMWHMLGTDNKGLPHEMLDLIVISRDAFIVVMIVGVIRQMLGRRADPVMDAHAGRDLLAGPFGAGERRKALKEVSLast
1 -13.200IDP04526 putative inner membrane protein [Salmonella typhimurium LT2] STM1637_1_516 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  9  11..................................PGDGLRKIKYKYHVCLIVIFSVLIRLLFLTDRY----------------WCDE-LISRHSVDNLLFHAAFD-----------------------HPPLYYLLLHDWMILWGDS----------IAAVRSLSLLFGILTVVLVIALTRWLANERTA--LLAGWFAALMPMAVHYSQTRMYALMGMLTLAAALALMMRYLVAYALLMTFSFYTHYFTLFTLIAHWIAVTHKTACYLKLPGWWFANLAIAVAYLPWLPVLFNLLTHLAQLRAGNDVTWRDLPAMYWHFFTGNNGQGFPSFILWLAVGGFIGTVGRISLCNGEYERYQLILFCNLVIPVMLVMPLFIDRYFFFSSLSIPPLLAVLLTRAKKAVCGFWFILFTL......................................................................... 370
2 -9.300IDP04349 putative inner membrane protein [Salmonella typhimurium LT2] STM0557_1_550 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  9  12.................................................MVIAILIVFSLVYSIGF-----------------------ITPMNSDDYTYALRELSLSSVKMHYLG-------SGRVVSDTISTSLLKFFS--------------------PHIYNAINSAALTLMVLCWTMIPATLTKSSPSPYVMIFLFFLYFVVGSANY-LWTNMFIAIYILISIYKSNLILFVYAISSIFANTSLVVVLISVAYFFIMNRNKYLLIGVFGSAIGAGVLLLAP-------------LSRASTIQDWYNQPLAWRVLEHFSERLPSAMGAYWQVYIAFIILLISVVLSRNSSSKLMFGSFLFMLGAIAANSRALNGALCFMILSISFVAAFTKFNKASIYLSVTTYAMAFLYFIPSYILYYSSIKSISKQTEIREEIIDRAKHNKQDQAIIPDYYFPPVLHAGPSL.................. 403
3 -7.150IDP04562 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_1080 [Clostridium perfringens ATCC 13124]  ali follow..  11  117TTSAPNKNESSDDSVPVKEESSDYVYANGGRHKSNHSTPTAHRMEGAIKMTR-----AEAQGY---VAC----------------------KKCF....................................................................................................................................................................................................................................................................................................................................................................................................... 185
4 -6.990IDP92565 nonstructural protein 1, partial [Dengue virus 2] AAA66406 [Dengue virus 2]  ali follow..  12  17..............................................................VVVTEDCGNRGPSLRTTTASGKLITEWCCRSCTLPPLRYRGEDGC---------------------YGM------------IRPLKEKEENLVNSLVTAGHGQIDNFSLGVLGMALFLEEMLRTRVGTKHAILLVAVSFVTLITGNMSFRDLGRVMVMVGATMT---DDIGMGVTYLALLAAFKVRPTFAAGLLL----KLTSKELMMTTIGIVLLSQSTIPETILELTDALALGMMVLKMVRKMEKYQLAVTIMAILCVPNAVILQNAWKVSCTILAVVSVSPLFLTSSQQKADWIPLALTIKGL----------PTAIFLTTLSRTNKKRSWPLNEAIMAVGMVSILASSLLKN------DIPMTGPLVAGGLLTVCYVLTGRSADLELERAADVKWEDQAEISGSSP.............. 374
5 -6.880IDP01810 gene: ygiB; hypothetical protein STM3187 [Salmonella typhimurium LT2] STM3187 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  8  8..................................HHASFRKSWSARHLTPVALAVTAVFMLAYQNADDCSAANPGKSAECTTAYNNALK-REDCVAEFGEGQCQQAPAQAGMAPENQAQAQQSSGSFWMPLMAGYMM............................................................................................................................................................................................................................................................................................................................................................. 131
6 -6.530IDP05718 putative lipoprotein [Bacillus anthracis str. Ames] BA_1601 [Bacillus anthracis str. Ames]  ali follow..  8  3.............................................KTKWLVGGVVTSLMTGTLFGCAQDLPPKPNDKSCSDWDWDDELGVWQ-C-DESSSSYRGHYFYGGTY-YRNKSTFKNSSAFKSY..................................................................................................................................................................................................................................................................................................................................................................... 83
7 -6.370IDP91390 Lipid A core - O-antigen ligase [Vibrio vulnificus CMCP6] VV1_1426 [Vibrio vulnificus CMCP6]  ali follow..  8  187....................................................................................................................................................................FLATGLIISGYLLARQPHKYNKHLSEITLLYLIPLLTVPLIVVLASRTGWLAAMIATLLLLPYLFGTKIRFWGWLGSIILGLSLSGALLQSTESNLAGQKTNLESARAYTFPQALDMLIEKPFTGYGYGNFESAYTLYTARQHLLNKQYPPALPAMDHPHNELLYWGVGGLVPLLGIFLAAILVLNRIYSAKKGTRLAMFALFVPIVLHSQL--EYPFYHSAAHWLI............................................................................................... 414
8 -6.240IDP00229 putative O-antigen biosynthesis protein YPO0417 [Yersinia pestis CO92]  ali follow..  9  41...................................................................................................................................VLIIISLIINRKSLDFKPLLTSPLVYLPAAMFVLLALSLLYLLYILPLALFFMNQPRLIKLFCTGFLVANAVILAGSLAVQNFFMALAALLWLVLAFQHQGWKRWGYSVLVVAASYSILFLIVGLGVWLFFSLGNRQRLTLVVLGALAFAALIFPILGHGAGGFYYENKEVDYKVNNPHNQYLLETIQSG----------VIGLFLFLAWVICCYRVIWQQTPALRNVLLAVLTSYMAFFNSFLLDSSEGHLFMIFVAVLA.............................................................................................. 393
9 -5.900IDP04470 putative amino acid antiporter [Yersinia pestis CO92] YPO2306 [Yersinia pestis CO92]  ali follow..  8  9..................ALTALVLSSMLGA--GVFSLPQNMAEVASPAALLIGWSITGIGIIF--------------------------LAFAMLLLTRLR---DLDGGIFTYAKEG----------FGDLIGFFSAWGYWLCAVIANVSYLVIVFAALSFFTLLGASFLLWLVHALVLRGVQTAASINLAATLAKLLPIGGFIILAGIAFSMLITLWVFIGV--ARNKKDVGRATMLAVISALSVY--LLITLLSLGVVPRAELAGMRNPSMAGIMVEMIIIATGLIISVCGAYLSWTIMAAEVPMVAAKHGAFPKIFRHQNKNNAPAQSLWLTNSAVQVALVLIWLTGSNYNTLLTIASEMILVPYFLVAASGACLYGLWLI------YAAGLVYLLLSVLLYAPGLLVFIYARKGHEGLRLLNTVERAAIFLVLLATIPATWLMMH.................................... 463
10 -5.720IDP04380 gene: rfaL; O-antigen ligase [Salmonella typhimurium LT2] STM3713_1_404 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  165.......................................................................................................................................................................MSDSMVFLFPALLNIWLFRKNAIKLVFLVLSAIYLFFILGTLSRGAWLAVLIVGVLWAILNRQWKLIGVGAILLAIIGALVITQH---HLLYKLQQTDSSYRYTNGTQGTAWILIQENPIKGYGYGNDVYDGVYNKRVVDYPTWTFKESIGPHNTILYIWFSAGILGLASLVYLYGAIIRETASSTLRKVAHLLLFLSFVGFYIVRGNFEQVDIAQIGIITGFLL.............................................................................................. 399
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;