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Query: [R] KOG1492 C3H1-type Zn-finger protein, from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRPFKQSKFSLVWTQNDPQPRMPIAHMRNQNIVPQLVPWKRVTYWRRLMNSVSAFRNGSSLNISRKLSMMRKRHTIYTRSTNGYSLRKSKVLSVGGSHLKWSKSIERDSRKANEEATLAVAAYSKKESEKQSGQNNTSTASRNHLAHGRMTLFPANLKFFIIDFWFSGERVFRFGSLRYKMDSSRRTLQRISDVDSPCSGPSENGKGVKRPFIPKRLVIGNEEYVRFGNGNQLVRDPKKRTRVLANEKVRWSLHNARLRLAKKKKYCQFFTRFGKCNKDDGKCPYVHDPSKIAVCTKFLNGLCANANCKLTHKVIPERMPDCSYYLQGLCNNEACPYRHVHVNPIAPICDGFLKGYCSEGDEHSYNCPVFEATGSCSQGLKCKLHHPKNQSKGRKRKRTNEPSQKNARRRYFSSLHNILSESEPMVFNRRSTDSEVFGMESLDFITLGTAEYEAGDDNDPATVQSISSDSESLISIYNLITPVALMHSRGFRFVTFKDEKSMKDVIEGLAGQELDGRSITVIMAQLRGSGRGSEDTAAVVAVTQEKVVVAMELVVVTQEEVVVAVEAKEDTAAVLAVTQEVVVVAAEAKEDTAAVLAVRRIWWWSRRKRRWRMVIPYWFCLIWVLCVVFGFTFATLDVTGRVIKFDIWKRNGKSLFLVLast
1 -10.400IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]  ali follow..  1408.FQARYAEKRIVFAVGPPMDDATEADAVSSVALMEKLRDILPSMAHEEGRFQEVTGGGATLQWDGPGTNILDRIAQEQATAGEGEQQTSEGIPTRDMQVDGTAVLEEAGEKSDKKKKKKEKKEKKEKKEKKEKKEKKEKKKKKGGETAAEPEEASAVLAPPPVPVPAAAIPSVLLPADSEDGEKEQPKEKKKEKKEKKKKKDGETDAEPEEASAVLAPPPVPVPAAAIPSILLPTDGEDGEKEKTKEKKTEKKKEKHTEKKHKKK--------------SEALPESETTAVVTVTPGEEDETSPLVPVPSSIASSEAPEPP---------STRVTPAPEPKAKPGL-----------SMGAALLAVRARSRLQRKHLAQQLSSSSSSEVSASSASSLSPSSSSSSDFAETRAKADALRARLQAAQARLAAARETEVSSSETESSETSEASFLSSDGEWDALWQSQRAAAMERQQRLQKMVSGVKAAYRRLEEENTRLAATRRRDDKLQRQVEAERERAVELLKEATRRAKEEKDLIARQPPPARDWSDTVVLSTPQIFVNSQAACAPFADSGRDEGGRDEWYEVSDACSRRAESSNESRTTAGAKLRQQQ-------------------------LDLAGRT................ 1990
2 -8.060IDP91693 gene: AMBP; protein AMBP preproprotein [Homo sapiens] NP_001624 [Homo sapiens]  ali follow..  18  226.....................................................................................................................................................................................................................................................................KKEDSCQLGYSAGPCM--GMTSRYFYNGTS-MACETFQYGGCTEKECLQT-----RTVAACN---RGPCRAFIQLWAF---DAVKGKCVLFPYGGCQGNGN------KFYSEKECR--EYCGVPGDGDEELLRFSN..................................................................................................................................................................................................................................................................... 352
3 -7.550IDP05358 conserved hypothetical protein [Bacillus anthracis str. Ames] BA_0685 [Bacillus anthracis str. Ames]  ali follow..  14  173...............................................................................................................................................................................................................................................................................................................................................................................................................................................................QIEEDKKTIDEKEASLVVDKQKLAKAQAELQDNLKKRQANLQTVQAKYNQVASQLNLAAEEKAKIESNMKAVQETIAREQEAARIAAEERAKAEAAAKAEQEALAKAQAEVAEKKKQEQASKPAEPVANNNSKVEPVQPSKPTAGGREIYVHATAYTPS-------VIPL----VYV----YGEAIAA-D-TGGAIKIDVWGRKNVKLTIL 419
4 -6.950IDP01930 gene: narY; nitrate reductase 2 beta subunit [Salmonella typhimurium LT2] STM1578 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  12  183..........................................................................................................................................................................................................................................................................CEH------CLN--PSC--------VATCPGAIYKREEDGIVLIDQD-------KCR----GWCIS-GCPYKKIYFNWKSGKSE-----------KCIF-CYPRIESGVCS--ETCV------------------------GRIRYLGVLLYDADRIEEAASTEHETDLYERQCDVFLNPHDPAVIEEALKQGIPQNVIDAAQRSPVYKMAMDWKLALPLHPEYRTLPMVWYVPPLSPIQSYADAGGLPHNGNILPAVETLRIPVQYLANMLSAGDTGPVIRALKRMMAMRHYMRSQTVEGVTDTRAIEEVG--LSIQQVEEMYRYLAIANYE------------RFVIP---------C---GFTFGAINITEVR------KAEGE..... 514
5 -6.920IDP95468 structural polyprotein [Chikungunya virus] ABD95938 [Chikungunya virus]  ali follow..  17.RPWTPRPTIQVIRPRPRPQRQAGQLAQLISAVNKLTMRAVPQQKPRRNRKNKKQKQKQQAPQNNTNQKKQPPKKKPAQKKKKPGRRERMCMKIENDCIFEVKHEGKVTGYACLVGDKVMKPAHVKGTIDNADLAKLAFKRSSKYDLECAQIPVHMKSDASKFTHEKPEGYYNWHHGAVQYSGGRFTIPTGAGKPGDSGRPIFDNKGRVVA-----IVLGGANEGARTALSVVTWNKDIVTKITPEGAEEWSLAIPVM--------CLLANTTFPCSQPPCTCYEKEPEETLRMLEDNVMRTCSPHRQRRSYKATRPYLAHCP------CEGHSCALERIRNEATDGTLKSLQIGIKTDDSRTSAPCTITGTMGRCPKGESCTFHHDPPVIGREKFHSRPQHGKELPCSTYVQSTAATTEEIEVHMPPDTPDRTLMSQQSGNVKITVNGQTVRYKCNCGGSNEGLTTTDKVINNCKVDQCHAAVTNHKK--------------QYNSPLVPRNAELGDRKGKIHIPFPLANVTCRVPKARNPTVTYGKNQVIMLLYPDHPTLLSYRNMGEEPNYQE------VMHKKEVVLTVPTEGLEVTWGNNEPYKYWPQIILYYYCILSLICCI-----AKAATYQEAAIY-LWNEQ-QPLF.. 766
6 -6.600IDP06014 SR2 [Toxoplasma gondii] AAZ94423 [Toxoplasma gondii]  ali follow..  12  432...................................................................................................................................................................................................................................................................IDSARKACH---ELGMCMGPEKSCTFEHSMDVAVRCTNTPPAEPPLGSLRISGAPATNGVGRLQFYNEG---GSVCS----TRESEKVACLQ--MGYCGGEETSLRHCPH--SDIYCVHIVGCR----GDGDPSGMGLFRTEDIPALSKRSLPPKIELNCGDRPLSQKQMGGQAGAMFVATCPEGCSEEPGSLKGTYIYTDDSPICKAAIHVGVVGPLGGNIVVVLGEGQDSFMESERNGVKSESFGRYDRTFMVSIPINSVKARTAKKYVDGATYAGRSAIPGGGKFPAFRESDTVTLVDVLPERFREDFTGFRGRPEDYVDTEKLPGAKALTGFSDFTFA-MAVTGKRKWRSILTQSGC---------GFTFAIDDCHPKFISTGIKPAIGEPLHIA 910
7 -6.590CPX_91710_91752 Complex of NXF1_HUMAN with TIP_SHV2C [Undefined organism]  ali follow..  10  603...............................................................................................................................................................................................................................................................................................................................................................................................FTHLKAKGEIPEVAFMKXMANEGEEIELTEFPETEKERKDEEKLSSCSEETTNTSSSSGSDHVPVPIEVNVIIQNSSRTEDELQNSKEIELTGFQGKLSSCSEETTAPSSSYSSKQASVFIEENGDNETSTYRPQNVLTNLNSLYTTFEDARAQGKGMVRHKSEDLQSFLEKYPPDFRKPKRDLSATDPGMPTPPLPPRPANLGERQASTVRLHVKESNCKQPRERKANVII----CLVVVILAVL------LLVT--VLSIHI----GKS.... 876
8 -6.560IDP92066 gene: GAPDH2; apicoplast glyceraldehyde-3-phosphate dehydrogenase 2 [Toxoplasma gondii] ABO93620 [Toxoplasma gondii]  ali follow..  25  1.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MSLY-PRSSVRLRT-LPLSHCLFLAL-----FLFLSFD-TSRSLNFSV-RLDGRD.... 64
9 -6.510IDP91673 CD44_HUMAN [Homo sapiens]  ali follow..  13  421.................................................................................................................................................................................................................................................................................................................................................................................................HSTTGTAAASAHTSHPMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSTTLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDVTGGRRDPNHSEGSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNRSLSGDQDTFHPSGGSHTTHGSESDGHSHGSQE------GPIRTPQWLIILA---ALILAVCIAVG---KKLVINGAV---D--RKNGKSVHLV 713
10 -6.450IDP92138 sufB/sufD domain-containing protein [Toxoplasma gondii ME49] TGME49_073450 [Toxoplasma gondii ME49]  ali follow..  12  6....................................................................................................................................................................................................................................................................RRREEGC------GEARLDEHRGNFWRQASALKL-----------SSVHTAQAIMRSGSP---FSSRSSVQSASSSF-HLSSD-------------CASPVSTSSLLSSFSEEG--ERGENATSPHCAMPPPLLDDAGALLPRNASTPFPTLSPFRVSAEARGRLQPQVVDSATDTFIPKHRNFSAHKIGQAAAVQSASAAADLPLVRDAVERAVWAAEKRQEKLMRQRAAEAAGEGENASTEDAAEEEMRRRVWRETERHMKSLLGGGTQVDVDDDNDSWLAEGYEDISAEPRFVPPDWTDVPRPCKNSTAITTLTASHLTKPVIDTADPRQR-NRLRIQYFSPKEKKRWRQILPLHYLYVFKLMNVIGWE-ACLDLPTPHARLEAFRHNLRSFYLL 469

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.