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Query: [K] KOG2181 LIM domain binding protein LDB1/NLI/CLIM, from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MCVVIFLKFLFSDNGNNQHGTEAAFGRLAQSYRIQDLLFIIVIFFRAIHIMMFHRPPSARPPLNHVDQLKSLQATALGKPGMRSQATEPQPIGNTVSPLEFRIHDMNRRLYIFSSTGVSENDQQQWWDAFSHEFFDDDCKLWFVIGSEPVAFASRERYIINRQFIPKFFRSIFDSGMRELQYVLRGPSRECTLANGSQAYENENVLQITRYDQSSQFEVNTEGKLYVEFAPFDEVMNYRIKAWTLELKRSNEFVYNQNTADYRVEAQNPEQENKPRMGFFKSTFNLMTMLKILDPMQSIMSSAKSAPAITPREVMKRTLFQHHQVRQQNMRQQQLNQQMMIPAPEPEKPKPARKRQRKPAANPRGSKKATAAAAAAAAAATNGVPPTVPTASPANNQQFPPNPMTSQFQQMSYPDVMVVGEPSMMGSEFGENDERTISRVENSQYDPNAMQMQSLGQGPNSSMNINGRNMMNQHHPGMQPPPGQQHMPPHSMGSQMPTSMHNPMHMPPGSMQGHGGMPPMPSTMANQMPPPNLPPHTMSNQMPNSRMPPMQGQMPPSGMPGQMSNPNMMGSGMPPMSMSSQMPGSMSNPMPNQMPGGMQMNQMPPPNYSQYTGGPPPQWPPPNSAMITGLast
1 -11.700IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]  ali follow..  8 1207......LHFNTYDSKTESRDRSAFFSLAVMLYNLPGELVSTYVYICVTQKVTERERRRILAQKEKQSREDAQRKARKQRRKAGHEGADNGAEDKQGAEGNEEEHGDAAAAAVAEESVSAEAV-------------QGDEEPKKVVKKGAVPRVKKRSYD--------------GTEVAAIAIERDFFTEAEAPDFKNLMSDVEHAINTHLGLSPGRVRAFQA-------RYAEKRIVFAVGPPMDDATEADAVSSVALMEKLRDILPSMAHEEGRFQEVTGGGATLQWDGPGTNILDRIAQEQATAGEGEQQTSEGIPTRDMQVDGTAVLEEAGEKSDKKKKKKEKKEKKEKKEKKEKKEKKEKKKKKGGETAAEPEEASAVLAPPPVPVPAAAIPSVLLPADSEDGEKEQPKEKKKEKKEKKKKKDGETDAEPEEASAVLAPPPVPVPAAAIPSILLPTDGEDGEKEKTKEKKTEKKKEKHTEKKHKKKSEALPESETTAVVTVTPGEEDETSPLVPVPSSIASSEAPEPPASTRVTPAPEPKAKPGLSMGAALLAVRARSRLQRKHLAQQLSSSSSSEVSASSASSLSPSSSSSSDFAETRAKADALRARLQAAQARLAAARETEV. 1809
2 -11.600IDP91541 3`,5`--cyclic-nucleotide phosphodiesterase, putative [Toxoplasma gondii ME49] TGME49_118680 [Toxoplasma gondii ME49]  ali follow..  9  356....VLCEFLYREN-NQIHGAMVA---LLRGLGINREM-TAACAVAAL------------------------------------------------------CHDINNNFFVASGAPLA--------------LYNDKAVLTFRVLGRH-------DCNVFAYLSDEEFKH-VRANMIDLILATDMKTHFDFLSRFRNRRQAPGFNFHKVAEDQWLAA-----EICIRAS--D--LGHAMTEWDQHFE-VTEFYLQGEEERRLGLHVSPLCDRDDHPSFSKCQHGFLGY--VVKPLIAELGECDTLQRIIP-QLMQNLKENMERWEAFTNEGVNVVLSSAALAYDIKGQGVDVDVDVNVLTAKDILAQSSDSVSDLKHQRRSTSERRDSAMQSNSTVGAPAPGSEAVFANRSSKLQETLIQQQRDFEIQQQNLMKQIVELKEQNAFVKAELERQRAQVTRQYSGMDRQDKGLSLVEGHDNEKHHHASSQSSALKKASQNSGTTLECFTSNSLFDGLNRS.............................................................................................................. 812
3 -8.560IDP91949 pneumococcal histidine triad protein E [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007099 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  9  715....................................................................................................................................................................................................................................................................FYPFHAGDTYLRVNPQFAVPKGTDALVRVFDEFHGNAYLENNYKVGEIKLPIPKLNQGTTRTAGNKIPVTFMANAYLDNQSTYIVEVPILEKENQTDKPSILPQFKRNKAQENSKLDEKVEEPKTSEKVEKEKLSETGNSTSNSTLEEVPTVDPVQEKVAKFAESYGMKLENVLFNMDGTIELYLPSGEVIKKNMADFTGEAPQGNGENKPSENGKVSTGTVENQPTENKPADSLPEAPNEKPVKPENSTDNGMLNPEGNVGSDPMLDPALEEAPAVDPVQEKLEKFTASYG............................................................................. 1006
4 -8.420IDP06427 gene: B21R; B21R [Monkeypox virus Zaire-96-I-16] NP_536609 [Monkeypox virus Zaire-96-I-16]  ali follow..  7  226....................................................................................................YNVSVSDASFRITLVNDTSEEILLMLTGTSSSDTFISSTNITVLITQNMNVTSNCDKCSMNLMAAVNEFNNT----LMKIGVKDDENNTVYNYYICKLTSTCDELNIIRNSVSTTNSRKRRDLNGEFEFSTSKELASPRRRRSDDKKEYMDMKLFDHAKKDLGIDSVIPRGTTHFQVGASGASGGVVGFQNVKSRASLLAEKIMPRVPITATEADLYATVNRQPKLPAGVKSTPFTEALASTINQKLSNVREVTYASSNLPGSSGYVHRPSDSVIYSSIRRSRLPSDSDSDYEDIQTVVKEYNERYGRSVSRTQSSSSESDFEDIDTVVREYRQKYGNAMAKGRSSSPKPDPLYSTVKKTTKSLSTGVDIVTKQSDYSLLPDVNTGSSIVSPLTRKGATRRRPRRPTNDGLQSPNPPLRNPLPQHDDYSPPQVHRPPTLPPKPVQNPTQLPPRPVGQLPPPIDQPDKGFSKFVSPRRCRRASSGVICGMIQSKPNDDTYSLLQRPPEYAEVGNGIPKNNVPVIGN.... 803
5 -7.560IDP05189 putative glycosyltransferase [Clostridium difficile 630] CD0240 [Peptoclostridium difficile 630]  ali follow..  11  5IVMMV-LELIIVDTGSTDNTIR-----IAKQYKVYFHNWN----FSSM-----------------------------------------------------R----NISISYAKGE----------WDA--DEVLIDYSNIIKFFESGLNKKFNSASVRLKNLYVLRFFKN-YCGKVHEPMYKNPIFNNIADFEHYGYL---FEDEEIRINKVKRNEKLLLE---ELKEDEKSPYTNYQIGKNLIILGKYQEALDYSKLEIVPGYLITNLAKVYLYLGKAKKCEKLCLKYINKDR.............................................................................................................................................................................................................................................................................................................................................. 267
6 -7.190IDP90964 Sensory box/GGDEF family protein VC0072 [Vibrio cholerae]  ali follow..  10  371..AMLYLQLVLNDTAGHDAGDGAI-SMLEDVLPFKATLFSVLLRDCTERDAVLVAQSIIHALSEVAFVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKENLYRQDDEDLRRRQLEMESVNLVHDALANEREVLVRIKNAAGEYVSPGIFRLDRKIVEQTFNWLEASGNSDFVAFLLERLRDSRIPCSKVCFEITETAAMRNLNQAIKV-LSQLKSLGCVLALDDFGSGLSLQKLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFVENQQILEALQQI.......................................................................................................................................................................................................................................................................................................................................... 740
7 -6.980IDP06374 gene: ORF17; ORF17 [Human herpesvirus 8] YP_001129369 [Human herpesvirus 8]  ali follow..  10  1MAQGLYV-FV-LEQ-TIEHLPETEVGWTLGLFQVSHGIFCTAIFLELASRLADTSHVARAP--------------------------------VKNLPKEPLLEILHTWLPGLSLSSIHPRELSQ------GPVFQH-----VSLC------------ALGR----R------------------------------------------------------RGTVAV----YGHDAEWVVSRFSSVSKSERAHILQHVSSCRLEDLSTPNFVSPLETLMAKAI------ASFIRDRLDLLKTDRGVASILSPAYLKAS-------------QFPVGIQAVTPPRPAMNSSGQEDIISIPKSAFLSMLQSSIDGMKTTAAKMSHTLSGPGLMGCGGQMFPTDHHLPSYVSNPAPPYGYAYKNPYDPWYYSPQLPGYRTGKRKRGAEDDEGHLFPGEEPAYHKDILSMSKNIAEIQSELKEMKLNGWHAGPPPSSSAAAAAVDPHYRPHANSAAPCQFPTMKEHGGTYVHPP---IYVQAPHGQFQQAAPILFAQPHVSHPPVSTGLAVVGAPPAEPTPASSTQSIQQQAPETTHTPCAAVEKDAPTPNPTSNRVEASSRSSPKSK..... 521
8 -6.960IDP04415 gene: icsA (virG); IcsA (VirG), outermembrane protein exposed to the bacterial surface by a C-terminal autotransporter domain and involved in the movement of intracellular bacteria by binding to N-WASP [Shigella flexneri] CAC05837 [Shigella flexneri]  ali follow..  13  647..ILSLGAVLGNDNGHNEGGDKNAFGRISYDYRLKQ--YL-----SQMDNQESKQMSNQESTQMSSRRASSQLVSSLNLGEGSIHTWRPEAIANLIAMNTMFSPSLYDRHSTIVDPTTGQLSETTMWNRMVYQIFTDHDGLHVGIMGAYGYQDSKTHYTAG--LYSSWFYSWFNNTVKG-----GLTGEKYSSKGITGALEAPQVQITRHYIEHNGTMVTSSAKLGLRTSCIDKETLRKFENWKWSSKQYGVIMNGMSNHQIGNRNVIEL-----KTGVGGRLADNLSI.................................................................................................................................................................................................................................................................................................................................................... 1076
9 -6.890IDP06369 gene: vIRF-4; vIRF-4 [Human herpesvirus 8] YP_001129412 [Human herpesvirus 8]  ali follow..  7  1.....................................................................................................................MPKAGGSEWATLWIIDALENNKFPYFSWFDRNN-------FAAAGSDIPSVYHAFDE--------------------RVYGPSPVVGQTVYGRFGR-----LRGTRRAVVR--RYSDTFGGSYVVWQLVRTPFKN---------------------------------------AAYGPEKLQRFIQCLLSPPMQTTATRRSDTREQSYEEAGAAAPAPPKAPSGLRGRPRKSNRYYNVGDITTEQKAACSVWIPVNEGASTSGMGSSGTRQVTQASSFTWRVPGDPPAPSTLTGPSDPHSSGAGLPGTAPPKPQHETRLAGTVSGVSGVAQTPGDTGQLAPPMRDGSRLPSTSPWIPACFPWGDLPVTGWWPQGASGLPEKVHPPTTGQFDPLSPRWTYTGIPSSQLNPAAPSWIPPHAQAGTFVGEFSQGAPLAPQGLLPQSGQCASAWLPRRETGAEGACGASTEGRAPQGAASERVYPFEPQPPSAPAPGYAKPSCYNWSPLAEPPA. 462
10 -6.870IDP92682 hypothetical protein NGO1785 [Neisseria gonorrhoeae FA 1090] YP_208816 [Neisseria gonorrhoeae FA 1090]  ali follow..  8  288..IVI-TEALVSIDVNSARATEAA--EVARQMRLRDLGGLVVIDF-----------------------MENPKHQRDVENVLRDALKKDRARVQMGKLSRFGLLELSRRLKPALGESSHAACPRCAGTGVIRG----------------------------------------ESTALHVLRMVQEEAMKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHLENPHYEINRIRTDDVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPAPTAAPEKKTSWWDSFKAWLKRIFGGSETQAVPAAETSEKRSTANRSGSRANNRRQNPRRSKREGSKIEVREAAGKTAGQKARADKAETRNNGNRRRNERGDRATERANEAEIQSRNVQPAAPVADAAPPETEGQTGKRRRNGSRNERGQTAPETAAVAETAVQTAENTPPEPYTAEDKGSKPKSERNRRERDSRDAKERRERNNQRDRRQNGKKRNIPSAAKIEQYLNIHDTADKVRSAAAHVFGETDANAPITVSIADPLIATPVQTASSAVSNGDALIYDAAEKIRRAAADILPEGAAPKAAAQEMPSETATFTAAAEQARETAQTG.... 865
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;