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Query: [A] KOG2242 Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain, from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDVRRLKVNELREELQRRGLDTRGLKTELAERLQAALEAEEPDDERELDADDEPGRPGHINEEVETEGGSELEGTAQPPPPGLQPHAEPGGYSGPDGHYAMDNITRQNQFYDTQVIKQENESGYERRPLEMEQQQAYRPEMKTEMKQGAPTSFLPPEASQLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTLast
1 -17.000IDP05117 putative collagen-binding protein [Clostridium difficile 630] CD2831 [Peptoclostridium difficile 630]  ali follow..  10  1.....MK---------------KGNRKALLISLIMILSMVVSTIYPTVSYASELGENSQIQSGSTNSSTGEEKESDNKKPEQTPEKDKATDNKKPEQTPEEEKPTDNKKPEQTPEEDKSTDNKKPEQTPEGEKPIDNKKPEQIPEEDKSTDNKKSEQALEDEKPLDNKNTEKTPEEDNLLEDENLLKVLEEELNEENEDYGFVVKINNNTIETE--------------------SMKKISFNLTYTPTSKGIQAGDS-ITFKVPDV................................................................................................................................................................................................................................................. 225
2 -14.100IDP05596 putative lipoprotein [Bacillus anthracis str. Ames] BA_3366 [Bacillus anthracis str. Ames]  ali follow..  11  1..MSKMKW--------------------FISLLLSLGLLAGCEEAAVKLEKKVEPKQEEVAKQEEKKDEAKPEEKPEEKQAEQEQNKQDEQKEKQEQKVEEKPKEEKPQAQLEVKKEEKQQEQPKEQPAVNKQPEQQKAQEEKQQQPKAQEVKEEAKVVNQPKETPKQEQKKKPEENNSVPTPPTPVPDPVPPVPDPVIPKPKQVTISVKGNEGYLLGAKKVDVQEGDTVYKVLQRTGLDVDAMGSKDGIYVKGINDLYEKDITATS-----------------GWK----------------Y------RVNGAFPNHS-TVKPGDTI------------EWVFVLK............................................................................................................................................................... 278
3 -13.900IDP92699 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus USA300_TCH1516] YP_001574462 [Staphylococcus aureus subsp. aureus USA300_TCH1516]  ali follow..  9  1MNKKAITKKGISNRLNKFSI-TVGTASILVGTTQEAKAAENTSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNNTNNDVTTKPSTSEPSTSEIQTKPTTPQESTNIENSQPQPTPSKVDNQVTDATNPKEPVNVSKE.......................................................................................................................................................................................................................................................................................................... 223
4 -13.800IDP92687 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus str. Newman] YP_001331559 [Staphylococcus aureus subsp. aureus str. Newman]  ali follow..  10  15MISNRLNKFSIRK--------TVGTASILVGTTQEAKAAENTSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNNTNNDVTTKPSTSEPSTSEIQTKPTTPQESTNIENSQPQPTPSKVDNQVTDATNPKEPVNVSKE.......................................................................................................................................................................................................................................................................................................... 223
5 -12.500IDP91038 hypothetical protein SAHV_2481 [Staphylococcus aureus subsp. aureus Mu3] SAHV_2481 [Staphylococcus aureus subsp. aureus Mu3]  ali follow..  11  1MRDKK-RVDFLSNKLNKYSI-TVGTASILIGSLMYLGTQQEAEAAENNIENPTTLKDNVQSKEVKIEEVTNKDTAPQGVEAKSEVTSNKDTIEHEASVKAEDISKKEDTPKEVANVAEVQPKSSVTHNAEAPKVRKARSVDEGSFDITRDSKNVVESTPITIQGKEHFEGYGSVDIQKNPTDLGVSEVTRFNVGNESNGLIGALQLKNKIDFSKDFNFKVRVANNHQSNTT---GADGWGFLFSGNAEEYLTNGGI---------------------------LG---------DKGLVNSGGF-DKTEKQAGQGYRGYG-AFVKND.................................................................................................................................................................................... 305
6 -11.900IDP06012 membrane-attack complex / perforin domain-containing protein [Toxoplasma gondii ME49] EEB00555 [Toxoplasma gondii ME49]  ali follow..  7  14...SRLQHIPFSTT-RYLPIRSHVLQSTVERIESPEALNEVPTKVERNEFTEKGDKTEQVLTAQADHKSLLEGRSVRLESTSTAPDDDFDFLFEDDTPKKPKSRVNKGTSSDETSPGDRSSGEGSSDSDSLLSVVHRTKGNATQANKNQTRITHPKSKAQHQKKVTKKQGIPGSDSLGTSSADFDFDIDSSSNTQADDSQRQSLGDSSALDLFGSDTGDTGDIFGFSNSS..................................................................................................................................................................................................................................................................................... 239
7 -11.700IDP06531 gene: fms7; LPXTG family cell surface protein Fms7 [Enterococcus faecium DO] AFK59141 [Enterococcus faecium DO]  ali follow..  10  1MN--SLRTKQV-------------LKGALV--ILFAVSTSVPQWTVYGESISSESESREVETTETTDAGNETKSSTSQTETNTETTVETSVTSTDQETTATTDNQQTEEATATKMSNDESSSAKVSDKENGTENDDIGKGENFNGKEYLNYFGKQMTEILNGPTEDIKSKLIELLVTENSVLMSMLGGTDDGTTPTENTGFYPNTKQLHQTVLN--------------------KQDGKMMD---------------------------YAYYVDQGSDKTVMIGFRGNWNNYKAGYNLLFVDSRATGN--SGGDYVTYG--YESDDVLY-WINQEVRERPSQKILLYGGSMGAA........................................................................................................................................................ 329
8 -11.400IDP91949 pneumococcal histidine triad protein E [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007099 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  6  799...VEVPILEKENQTDKPSILPQFKRNKAQENSKLDEKVEEPKTSEKVEKEKLSETGNSTSNSTLEEVPTVDPVQEKVAKFAESYGMKLENVLFNMDGTIELYLPSGEVIKKNMADFTGEAPQGNGENKPSENGKVSTGTVENQPTENKPADSLPEAPNEKPVKPENSTDNGMLNPEGNVGSDPMLDPALEEAPAVDPVQEKLEKFTAS.......................................................................................................................................................................................................................................................................................................... 1004
9 -11.300IDP91910 surface protein PspC, partial [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100003565 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  7  1.........................KPKPEVKPQLEKPKPEDKPQLEKPKPEVKPQLEKPKPEVKPQLEKPKPEDKPQLEKPKPEVKPQLEKPKPEVKPQLEKPKPEDKPQLEKPKPEVKPQLEKPKPEVKPQPEKPKPDNSKPQADDKKPSTTNNLSKDKQPSNQASTNEKATNKPKKSLPSTGSISNLALEIAGLLTLAGATILAKK.......................................................................................................................................................................................................................................................................................................... 184
10 -11.100IDP92613 RecName: Full=Serine-rich adhesin for platelets; AltName: Full=Staphylococcus aureus surface protein A; Flags: Precursor SAOUHSC_02990 [Staphylococcus aureus subsp. aureus NCTC 8325]  ali follow..  9  1MS-KRQK--AFHDSLANEKTRVRLYKS--LPFISHSLVSQDNQSISKKMTGYGLKTTAVIGGAFTVNMLHDQQAFAASDAPLTSELNTQSETVGNQNSTTIEASTSTADSTSVTKNSSSVQTSNSDTVSSEKSEKVTSTTNSTSNQQEKLTSTSESTSSKNTTSSSDTKSVASTSSTEQPINTSTNQSTASNNTSQSTTPSSVNLNKTS.......................................................................................................................................................................................................................................................................................................... 223
11 -11.100IDP06504 Surface protein from Gram-positive cocci, anchor region [Enterococcus faecium DO] EAN10897 [Enterococcus faecium DO]  ali follow..  10  1...................MRTK-LKGALV--ILFAVSTSVPQWTVYGESISSESESREVETTETTDAGNETKSSTSQTETNTETTVETSVTSTDQETTATTDNQQTEEATATKMSNDESSSAKVSDKENGTENDDIGKGENFNGKEYLNYFGKQMTEILNGPTEDIKSKLIELLVTENSVLMSMLGGTDDGTTPTENTGFYPNTKQLHQTVLN--------------------KQDGKMMD---------------------------YAYYVDQGSDKTVMIGFRGNWNNYKAGYNLLFVDSRATGN--SGGDYVTYG--YESDDVLY-WINQEVRERPSQKILLYGGSMGAA........................................................................................................................................................ 326
12 -10.900IDP00754 gene: spa; immunoglobulin G binding protein A precursor SACOL0095 [Staphylococcus aureus subsp. aureus COL]  ali follow..  7  1..MKKKNIYSIRK--------GVGIASVTLGTLLISGGVTPAANAAQHDEAQQNAFYQVLNMPNLNADQRNGFIQSLKDDPSQSANVLGEAQKLNDSQAPKADAQQNNFNKDQQSAFYEILNMPNLNEAQRNGFIQSLKDDPSQSTNVLGEAKKLNESQAPKADNNFNKEQQNAFYEILNMPNLNEEQRNGFIQSLKDDPSQSANLLSE.......................................................................................................................................................................................................................................................................................................... 200
13 -10.800IDP90417 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_504 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  10  61LPASDYEVMEIRDALKAVGLDRGGSREALLKMPKVAPIVSVSEDNTIVSEEEVVADSTVAAPASTPVAPMSKKERRKEFKNEKWKDKKKQGRRRNSKEIADAVGSSQEMIDTVAEECLQESSSEEGDFSERRFSLIPPPTRLISDGPEEPEEESQPVTSVDLNESLNALVSESCNVIESILADEDTVVFTKEKDQTAEESQEQPSLSLE.......................................................................................................................................................................................................................................................................................................... 276
14 -10.800IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]  ali follow..  9 1715.STRVTPAPEPKAKPGLS--GAALLAVRARSRLQRKHLAQQLSSSSSSEVSASSASSLSPSSSSSSDFAETRAKADALRARLQAAQARLAAARETEVSSSETESSETSEASFLSSDGEWDALWQSQRAAAMERQQRLQKMVSGVKAAYRRLEEENTRLAATRRRDDKLQRQVEAERERAVELLKEATRRAKEEKDLIARQPPPARDWSDTVVLSTPQIFVNSQAACAPFADSGRDEGGRDEWYEVSDACS--RRAESSNESRTTAGAKLRQQQLDL-------AG.............................................................................................................................................................................................................................. 1988
15 -10.700IDP02382 hypothetical protein lmo0320 [Listeria monocytogenes EGD-e] lmo0320 [Listeria monocytogenes EGD-e]  ali follow..  9  138YDYIQTAINELLTITDQNAINTSSEKESFLNNAQQQLDARIAQEQAAIQAVNQLFLEDSPVNSIKAETTQDLIDQAQTLVDVLPASELKDTLQANIVKAQTELDERSKPVTPPKNDPEPDNPEEPVTPVDPATPIPDEPSTPTDPATPEKPEITTPENPESTVVEADSSENEPEKSADSKIVNNPIQITSQATKTATKQAKSSATKTTLPL........................................................................................................................................................................................................................................................................................................ 370
16 -10.400IDP05007 putative lipoprotein [Bacillus anthracis str. Ames] BA_3383 [Bacillus anthracis str. Ames]  ali follow..  3  1.....MKMKKVAIASITIGTMLTMAACSPSADKETDKKEQVTAQNEGEVKTTSTDETSKTTKDTDKETNTSSNEKTDKDAKNTKESSGTESNGKTSTQNENVKTKEKETTGKTNDQTTSGKTTDQSTSTNSDGKTTKDPKKSVAVKTSVKEVAALVDSLDKQLAANPKLETVNKLGKQINAKWDVIEKELETSHPAEYKTIGQ................................................................................................................................................................................................................................................................................................................ 198
17 -10.300IDP05521 putative cell surface protein [Clostridium difficile 630] CD1858 [Peptoclostridium difficile 630]  ali follow..  9  1..MKKMKVISL---FAGSKIAQGGLFTTLVNPIEAVAQIKVEVEVNVKYIFEDEKVFKEEKIKAEKGRLLDSGDLPIIPDDMKFIDDFLFYEVKGDGKDEIIRKVTKIDVKDKETQTENESSKSEQSSQSNASKIENKGTQTELSKDDISKMEKESKELKEKLDKLNQEIKDKDKLSEKQKDKIKDLEEKIDKLKEKLEKGKDDKDLSA.......................................................................................................................................................................................................................................................................................................... 224
18 -9.970IDP91698 gene: NPM1; nucleophosmin isoform 1 [Homo sapiens] NP_002511 [Homo sapiens]  ali follow..  10  70.SPIKVTLATLKMSVQPT-LGKCGSGPVHIQHLVAVEEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVKKSIRDTPAKNAQKSNQNGKDSKPSSTPRSKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQEAIQD................................................................................................................................................................................................................................................................................................................ 286
19 -9.900IDP05565 gene: spl; peptidoglycan lytic protein P45 [Listeria monocytogenes EGD-e] lmo2505 [Listeria monocytogenes EGD-e]  ali follow..  9  75FDKTGKELKKLNEDIKSINERIKERETVLKERARAMQKTSNSNAYLEVILDAENLSDLVGRVSAVNQLVDSDKSILEDQQNDEKALKTKQTAVKKKQEDQATAIHEYEAQQNKIEAQKAEKEAIVAQLASDQASAENAKAGLVSERDKAAKEATARATALREATSSNVGQESSSSDTSTPSKKSNTTKNVASNDNNSAPSAATPSSGGYSAMISAANAQL-----------------GKPYSLGATGPS---------FDCS----------------------GFT-------------SYAFRAAGVSLPRTSGGQYASQAKPGDLV--FFNYGSGIAHVGIYVGGGQMIGVKYDNITS.................................................................................................................................................. 385
20 -9.810IDP92050 MAK16 protein, putative [Toxoplasma gondii ME49] TGME49_049950 [Toxoplasma gondii ME49]  ali follow..  13  143...RREKAREKKAEVAAH-LE-DVIESELLKRLQQGVYGTLYNFESEKTAEAEADQEEEEVKQDKAEKRGVVAFEEEDEEEELSEYSESEGSEDFDFDESDEEEDIEDLEFSDEEFAEPAHKAPRRGSTATSVHGSRRAEQRNGNEEAEMPGEKKSVSGRLLQLSGLKRQLAKRGRAHKAICFEEQDEREAALQEE....................................................................................................................................................................................................................................................................................................................... 333
21 -9.750IDP06042 hypothetical protein jhp0369 [Helicobacter pylori J99] NP_223088 [Helicobacter pylori J99]  ali follow..  9  25.....................................................................................................................................................AEENITKENMTETNTTEENTPKDAPILLEEKRAQTLELKEENEVAKKIDEKSLLEEIHKKKRQLYMLKGELHEKNESILFQQMAKNKSGF---FIGVILGDIGINANPYEKFELLSNIQASPLLYG------LRSGYQKYFANGISA--EYLGGAMKGFKSDSLASYQTAS------DLL---MDKPIDKEKRFAL---GIFGGVGVGWNGMYQNLKEIRGYSQPNAFGLVLNLG........................................................................................................................... 244
22 -9.670IDP91997 cell wall surface anchor family protein, partial [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100004547 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  10  12WSIRRLSV---------------GVASVVVQPSSVRADVVNPTPGQVLPEETSGTKEGDLSEKPGDTVLTQAKPEGVTGNTNSLPTPTERTEVSEETNSSSLDTLFEKDEEAQENPELTDALKETVDTADVDGTQASPAETTPEQVKGGVKENTKDSIDVPAAYLEKAEGKGPFTAGVNQVIPYELFAGDGMLTRLLLKASDNAPWSDNGTAKNEVDLNGNTVGKQGQALIDQLRANGTQTYKATVKLTNLVATKNVDININGLVAKETVEKAVKDNVKDSIDVGPFTAGVNHVIPYEL----FAGDGM-SDNGEAKN-GQYF-DGNVAGALID---------QFRANGT............................................................................................................................................................. 412
23 -9.610IDP91664 gene: BBC3; bcl-2-binding component 3 isoform 4 [Homo sapiens] NP_055232 [Homo sapiens]  ali follow..  8  1................................MARARQEGSSPEPVEGLARDGPRPFPLGRLVPSAVSCGLCEPGLAAAPAAPTLLPAAYLCAPTAPPAVTAALGGSRWPGGPRSRPRGPRPDGPQPSLSLAEQHLESPVPSAPGALAGGPTQAAPGVRGEEEQWAREIGAQLRRMADDLNAQYERRRQEEQQRHRPSPWR.................................................................................................................................................................................................................................................................................................................. 169
24 -9.340IDP00824 IgG-binding protein SBI SACOL2418 [Staphylococcus aureus subsp. aureus COL]  ali follow..  5  5.YISKLLV---------------GAATITLATMISNGEAKASENTQQTSTKHQTTQNNYVTDQQKAFYQVLHLKGITEEQRNQYIKTLREHPERAQEVFSESLKDSKNPDRRVAQQNAFYNVLKNDNLTEQEKNNYIAQIKENPDRSQQVWVESVQSSKAKERQNIENADKAIKDFQDNKAPHDKSAAYEANSKLPKDLRDKNNRFVEK.......................................................................................................................................................................................................................................................................................................... 197
25 -9.070IDP92610 gene: srr-2; serine-rich repeat protein [Streptococcus agalactiae] AAZ95526 [Streptococcus agalactiae]  ali follow..  7  16...VRVKMRKVKSVMTQIGYKEKSSKVQTTSEDLSRTKTSASILTAVAALGAVVGGTTDTTSVSAEETPTATELTGNEKTLATAETVVVAPEVKTVNSDSSSHSTSESQSMSTSTLQSTSASLSASESLMDSTSASLSESSSLSEYSSLSLSSSESVSASESVQSSEAATTARVQPRAMRVVSSASDMETLPAALISGEGD.................................................................................................................................................................................................................................................................................................................. 226
FFAS is supported by the NIH grant R01-GM087218-01
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Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.