current user: public
If you have questions about the server, please let us know.

Query: [T] KOG2290 Rhomboid family proteins, from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .  560    .  570    .  580    .  590    .  600    .  610    .  620    .  630    .  640    .  650    .  660    .  670    .  680    .  690    .  700    .  710    .  720    .  730    .  740    .  750    .  760    .  770    .  780    .  790    .  800    .  810    .  820    .  830    .  840    .  850    .
# Score Template Links and tools%idFirst MSEARRDSTSSLQRKKPPWLKLDIPSAVPLTAEEPSFLQPLRRQAFLRSVSMPAETAHISSPHHELRRPVLQRQTSITQTIRRGTADWFGVSKDSDSTQKWQRKSIRHCSQRYGKLKPQVLRELDLPSQDNVSLTSTETPPPLYVGPCQLGMQKIIDPLARGRAFRVADDTAEGLSAPHTPVTPGAASLCSFSSSRSGFHRLPRRRKRESVAKMSFRAAAALMKGRSVRDGTFRRARRRSFTPASFLEEDTTDFPDELDTSFFAREGILHEELSTYPDEVFESPSEAALKDWEKAPEQADLTGGALDRSELERSHLMLPLERGWRKQKEGAAAPQPKVRLRQEVVSTAGPRRGQRIAVPVRKLFAREKRPYGLGMVGRLTNRTYRKRIDSFVKRQIEDMDDHRPFFTYWLTFVHSLVTILAVCIYGIAPVGFSQHETVDSVLRNRGVYENVKYVQQENFWIGPSSEALIHLGAKFSPCMRQDPQVHSFIRSAREREKHSACCVRNDRSGCVQTSEEECSSTLAVWVKWPIHPSAPELAGHKRQFGSVCHQDPRVCDEPSSEDPHEWPEDITKWPICTKNSAGNHTNHPHMDCVITGRPCCIGTKGRCEITSREYCDFMRGYFHEEATLCSQVHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGLFLSFAFLPYISFGKFDLYRKRCQIIIFQVVFLGLLAGLVVLFYVYPVRCEWCEFLTCIPFTDKFCEKYELDAQLHLast
1 -15.400IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]  ali follow..  8 1615.PEEASAVLAPPPVPVPAAAIPSILLPTDGEDGEKEKTKEKKTEKKKEKHTEKKHKKKSEALPESETTAVVTVTPGEEDETSPLVPV----SIASSEAPEPPASTRVTPAPEPKAKPGLSMGAALLAVRARSRLQRKHLAQQLSSSSSSEVSASSASSLSPSSSSSSDFAETRAKADALRARLQAAQARLAAARETEVSSSETESSETSEASFLSSDGEWDALWQSQRAAAMERQQRLQKMVSGVKAAYRRLEEENTRLAATRRRDDKLQRQVEAERERAVELLKEATRRAKEEKDLIARQPPPARDWSDTVVLSTPQIFVNSQAACAPFADSGRDEGGRDEWYEVSDACSRRAESSNESRTTAGAKLRQQQLDLAGR............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1989
2 -9.660IDP92687 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus str. Newman] YP_001331559 [Staphylococcus aureus subsp. aureus str. Newman]  ali follow..  7  2..........................................................................................INRDNKKAIT-SNRLNKFSIRKYGTVGTTLIFGLGNQEAKAAENTSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNNTNNDVTTKPSTSEPSTSEIQTKPTTPQESTNIENSQPQPTPSKVDNQVTDATNPKEPVNVSKEELKNNPEKLKELVRNDSNTDHSTKPVATAPTSVAPKRVNAKMRFAVAQPAAVASNNVNDLIKVTKQTIKVGDGKDNVAAAHDGKDIEYDTEFTIDNKVKKGDTMT................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 328
3 -8.640IDP04526 putative inner membrane protein [Salmonella typhimurium LT2] STM1637_1_516 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  10  60..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................DNLLFHAAF--VHPPLYYLLLHDWMILWAVRSLSLLFGILTVVLVIALTALLAGWF-AALMPMAVHYSQETRMYALMGMLLAAALALMMWIKTPTHNRYLVAYALLMTFSF--------YTHYFTLFTLIAHWIAVTILSCQSHKTACYLKLPGWWFANLAIAVAYL...................................... 230
4 -8.630IDP90350 hypothetical protein CT456 [Chlamydia trachomatis D/UW-3/CX] CT456 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  7  1MTNSISGYQPTVTTSTSSTTSASGASGSLGASSVSTTANATVTQTANATNSAATSSIQTTGETVVNYTNSASAPNVTVSTSSSSTQA-------------------------------------TATSNKTSQAVAGKITSPDTSESSETSSTSSSDHIPSDYDDVGSNSGDISNNYDDVGSNNGDISSNYDDAAADYEPIRTTENIYESIGGSRTSGPENTSGGAAAALNSLRGSSYSNYDDAAADYEPIRTTENIYESIGGSRTSGPENTSGGAAAALNSLRGSSYSNYDDAAADYEPIRTTENIYESIGGSRTSGPENTSDGAAAAALNSLRGSSYTTGPRNEGVFGPGPEGLPDMSLPSYDPTNKT-----------SLLTFLSNPHVKSKMLENSGHRSSFILWDQVCSIKVNMCAKFCTGFSKFSGDWDSLVEPMVSAKAGVASINNKFKTCVAYGPWNSQ--EASSGYTPSAWR-----------RGHRVDFG................................................................................................................................................................................................................................................................................................................................................................... 475
5 -8.570IDP92699 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus USA300_TCH1516] YP_001574462 [Staphylococcus aureus subsp. aureus USA300_TCH1516]  ali follow..  9  2......................................................................INRDNK-----AITKKGMI------------SNRLNKFSIRKYGTTLIFGLGNQEAKAAENTSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNNTNNDVTTKPSTSEPSTSEIQTKPTTPQESTNIENSQPQPTPSKVDNQVTDATNPKEPVNVSKEELKNNPEKLKELVRNDSNTDHSTKPVATAPTSVAPKRVNAKMRFAVAQPAAVASNNVNDLIKV............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 286
6 -8.030IDP05321 putative conjugative transposon cell wall hydrolase [Clostridium difficile 630] CD1857 [Peptoclostridium difficile 630]  ali follow..  7  2.....................................GKKLKKDFKERQRARIEKETLQSNMGIEPEESKLKYNDDYRGKIVHDKDRFQDKVHEKTSKMTSDSEPVRGTSKRNARYRASNKDSITSSTETGGVSQEEIGKADYGTEKDGKIYDPLGKDLDNDGIIDRYDNDFRDSDYFESTYDVDGLKKDEISGNPVNKQNTQKKNYKRKNYSDKLYTRKKDKEAKEEKADNKKSGKEAVLDREKKNRLSKEQETIFENKTSKVSALSGLAKGNETVRDYLSH-GSDENQGVEAGEKTADTSSKLIHGIKNYSDKKRTKKGYDLTNKDYKIRKRKSKLEFRDAKEELKKTEEYQKANNFKRFQKRKQMKDSIKRQNKSRLRDRIKEGLIGSLKSSKEVILRKTKGL---MIIFIGLILLRTFFINFAGTGMIGFMNSTSTVLTTSYLSKP---------------NVLTEIHQQFS---SMEQGLQDELESVEEN........................................................................................................................................................................................................................................................................................................................................................................ 438
7 -7.990IDP91444 hypothetical protein VV1_0416 [Vibrio vulnificus CMCP6] VV1_0416 [Vibrio vulnificus CMCP6]  ali follow..  12  37...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ILAMGIFYGGLSQVIVGIM---------CFKRGDTFGTTAFTSYGLFWLTLVALIVMPYMGLPASGWYLALWGIFTGFMFIGSLCYPTAKQVVFGSLTILFALLAARDFTGSELIGTIAGFE-GIFCGAS...................................................................... 161
8 -7.790IDP91420 hypothetical protein VV1_0667 [Vibrio vulnificus CMCP6] VV1_0667 [Vibrio vulnificus CMCP6]  ali follow..  12  1..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MELLVGLLNDMFFA-----AIPAVGFELVFIYCALGGAIGHGSRY-LMMKFGIPIEWATFFAATLVGMIGV--YWSRRLLAHPKVFTVAAL---IPMVP--------GVFTFKAMIAMVEINHLGYTPELVAVCMENFLKAMFIIAGLAVGLAV................................... 142
9 -7.770IDP05290 gene: sugE; quaternary ammonium compound-resistance protein [Clostridium difficile 630] CD0488 [Peptoclostridium difficile 630]  ali follow..  12  2........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................KWLFLFVAGLFEVFWAFQLKNSHGFSKLTSILTVVGMIVSFYFLSLALKHLPLGTSYAIWGTVGTAIVGMAILNEPISISRIACIGFIVVGIVGLKLL............................................................................................. 103
10 -7.750IDP00194 putative membrane protein YPO0983 [Yersinia pestis CO92]  ali follow..  7  103................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................WVESLLQPSTFTQILLVITICVFAPISEE---------IIFRGFLLNAGIGFGRRGRLLAVVITSLLFALV--------------HTQYLYPATFVSLFVFSAILCEV--MPMVLHSANNIASVAWVLTL..................................................................... 215
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;