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Query: [G] KOG2762 Mannosyltransferase, from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEGEQSPQGEKSLQRKQFVRPPLDLWQDLKDGVRYVIFDCRANLIVMPLLILFESMLCKIIIKKVAYTEIDYKAYMEQIEMIQLDGMLDYSQVSGGTGPLVYPAGHVLIYKMMYWLTEGMDHVERGQVFFRYLYLLTLALQMACYYLLHLPPWCVVLACLSKRLHSIYVLRLFNDCFTTLFMVVTVLGAIVASRCHQRPKLKKSLALVISATYSMAVSIKMNALLYFPAMMISLFILNDANVILTLLDLVAMIAWQVAVAVPFLRSFPQQYLHCAFNFGRKFMYQWSINWQMMDEEAFNDKRFHLALLISHLIALTTLFVTRYPRILPDLWSSLCHPLRKNAVLNANPAKTIPFVLIASNFIGVLFSRSLHYQFLSWYHWTLPILIFWSGMPFFVGPIWYVLHEWCWNSYPPNSQASTLLLALNTVLLLLLALTQLSGSVALAKSHLRTTSSMEKKLNLast
1 -5.800IDP04526 putative inner membrane protein [Salmonella typhimurium LT2] STM1637_1_516 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  10  15.....................................LRKIKYKYHVCLIVIFSVLIRLLFLTDRYL----WCDEASSVLISRHSVDNLLFHAAFDVHPPLY---YLLLHDWMILWGDSIAAVRSLSLLFGILTVVLVIALTRWLANERTALLAGWFAALM-RMYALMGM------LTLAAALALMMWIKTPT--------HNRYLVAYALLMTFSFYTHYFTLFTLIAHWIAVTILHKTACYLKLPGWWFANLAIAVAYLPWL.................................................................................................................................................................................................. 233
2 -5.730IDP91390 Lipid A core - O-antigen ligase [Vibrio vulnificus CMCP6] VV1_1426 [Vibrio vulnificus CMCP6]  ali follow..  89.........................................................................................................SCLILTVPLFYANSHYMQSVSRLVGLWAGFGFFVLLQQFSFSNKYKQRLLWLVVLAVVIESFIYYQFLW-SFLATGLIISGYLLARQPHKYNKHLSEITLLYLIPLLTVPLIVVRTGWLAAMIATLLLLPYLYRFGTKIRFWGWLGSIILGLSLSGALLQSTESNLAGQKTNLESARAYTFPQALDMLIEKPFTGYGYGN--------------FESAYTLYTARQHLLNKQYPPALPAMDHPHNELLYWGVEGGLVPLL----GIFLAAILVLNRIYSAKKGTRLAMFALFVPIVLHSQL---YPFYHSAAHWLIFIILIYWV............................. 422
3 -4.730IDP91718 gene: OTUB1; ubiquitin thioesterase OTUB1 [Homo sapiens] NP_060140 [Homo sapiens]  ali follow..  13  47...........................................................LVSERLELSVL--NIYQQKIKDLHKK--SYIRKTRPD-GNCFYRA---FGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFESDHIHIIALAQALSVSIQV-YLLYRPGHYDILY............................................................................................................................................................................................................................... 270
4 -4.520IDP91361 NhaP-type Na+/H+ and K+/H+ antiporters [Vibrio vulnificus CMCP6] VV1_2840 [Vibrio vulnificus CMCP6]  ali follow..  11  75...................................................LFLFLFLPTLIFESAFA-MEVHLFRRMFTQIVI----------AVPGLML---AIWLTAELVAWVLPEHWQWSWALLMFGALISAT-VAVVALLKEVSSRKRLETLI------------SLLNDGTAIVFFSLFYGWVLMEFSNPGEAITAPPWQAVAQFFVVVFVGLAVGLILGGLCILWIDRVFNDPMIEISL--TIAAAYSAFFISENFHVSGVVAVVTLAIMFASVGRTRISPEVAGFLHHFWEMMAHMANTLIFLLVGILVAIRVPLDDKEAWLALFV-----------------LYLGIMAIRACSITVFMPILKRIGIGITYEKAVVLCWGGLRGAVSLALAMTVA---SDIIPKQIGDHVLFLCAGIVVLTILFNGSTMGHVLKWLNLSSLPPGKQAT. 439
5 -4.310IDP05208 putative carbon starvation protein [Clostridium difficile 630] CD2373 [Peptoclostridium difficile 630]  ali follow..  1...................................MYTKTKKFYKWGDIMTTFLIGLAILLIGGALYGAYCEKVF-RKTPALAQSDGVDYLNIAG-TGPILGPGGALHDYSGMISIREKGAQMNKVFQVYNIFLCLLMLLVGAVFIYTPGD----LVVTQILNMKSTINNPVVWIVYGLIFLYYLCATLF--------KIIGKVYPIFGAILLLSAAGVGIGIFT-LANLSLANWKGIHPDGIPLIPTFFVTVACGIVSGFHSTQATLIARSVSNEKEGKTTFY------MMILEGL-------IAMIWAAAAMGIYNKGIPKELVGSPDVIGLVARDLLGSIGGIIAIIGVIVLPITSGDTALRSLRLMLADYFHYDQKEKKHRVILSICIFIPVIAILIFFNILWRYFSWSNQTIAIFAFAMITVYL............................. 428
6 -4.290IDP90775 gene: dipZ; thiol:disulfide interchange protein precursor [Yersinia pestis CO92] YPO0345 [Yersinia pestis CO92]  ali follow..  11  208..................................................................................................PCVLP----MYPLISAVILGREKPHSQRRLILAVVYVQGMALTYTLL---------LVVAAAGLQFQAALQHPYVLIGLSVLFVLLALSMLQLPSSLQTRLTQWSNSQRGGSLAGVFAMGA-LAGLICSPCLSAILLYIAQSG--NMLAGGGTLYLYALGMGIPLVVVTLFGLIPRS---------PWMQYVKEA---------FGFVILALPVFLL............................................................................................................................................... 404
7 -4.230IDP00137 gene: VC0959; Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence VC_0959 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  11  47....................................LIDHDTRDMLEGVMEIAEMRVRDIMIPRSQMVTIDRTHNLDALVAIMT--DAQHSRYPVISEDKDHVEGILLAKDLLKYLGSNCAPFNIQEVIRPAVVVPESKRVDRLLKEFR-----------EERYHMAIVVDEFGGVSGLVTIEDILEEIV............................................................................................................................................................................................................................................................................ 187
8 -4.220IDP05527 putative carbon starvation [Clostridium difficile 630] CD2600 [Peptoclostridium difficile 630]  ali follow..  11  1.................................................MVSFLGSIVVLIVGYFVYGTFDGVDYVPMKWKRIFL--IQFLNIAG-LGPIFGAAGGVHDFSGYLSMKNKGTSANGAKIAMRIFSVILLVLVGVVFVTGPAG-----------------LLKTLTGVNAQIWVGVIILYYIMATVLPIDKLIGKIYPLFGAALLIMAVGVAGGLIIKGYNIPNINLQNMNPNGTPLFPYLFITIACGAISGFHATQSPLMARCVEKESEARPVFYGSMVAEGII--------ALVWAAAAMSYFHGIPQLNVIFNDGGAATVVNTVSVGLMGPIGGALAILGVVACPITSGDTAFRSARLTIADAMNYNQDAVKNRFLIALPLFAVGVALFIDFNIIWRYFSWANQTLAMIMLWTGSAYL............................. 402
9 -4.170IDP04295 gene: nuoA; NADH dehydrogenase I, A subunit [Francisella tularensis subsp. tularensis SCHU S4] FTT0031 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  20  69................................................................................................................................................................................................................................................................YLIAVLFLV----------FDLELAFIIPWGINLRASAGMPAIS-DHAFFAMIIFLVVLFLGLIYAWKK..................................................................................................................................... 126
10 -4.040IDP91707 gene: MAPK8IP1; C-Jun-amino-terminal kinase-interacting protein 1 [Homo sapiens] NP_005447 [Homo sapiens]  ali follow..  12  437.PQPPACLSEDSTPDEPDVHFSKKFLNVFMSGRSRSSSAESFGLFSCIINGEEQEQTHRAIFRFVPRHEDE--LELEVDDPLLVELQAEDYWYEA-TGARVFPAYYAIEVTKEPEHMAALAKNSDWVDQFRVKFLGSVQVPYH------------VLCAAMQKIATTRRLTVHFNPPSSCVLEISVRGVKIGVKADDSQ------------------EAKGNKCSHFFQLKNISFCGYHPKNNKYFGFITKHPADHRFACHVFVSEDSTKALAES--VGRAFFYKQFVEYTCPTEDIYLE.............................................................................................................................................................. 711

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.