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Query: [A] KOG3013 Exosomal 3`-5` exoribonuclease complex, subunit Rrp4, from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVTILKPEEFYVSSEADIVNDVSMTEMEDEIMEDEQMGLVDGEDVLEEFDKSIHQNLVTPGQLVTDDPQFMRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLIIGKIAEVQPKRWKVDIGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHTRSLKYGKLRNGVFLKVPPALVVRSKSHAYALAGGVDIILSVNGYVWVSKHNENQHSSVSITRLEEEASESIYSNENDEIDGYTRLNISRVSICIKGLASRSLPLTQASITNFYESSLVFSNLQDLTVPKNMDQIAMEAMQLast
1 -14.100IDP00627 hypothetical protein SACOL0552 SACOL0552 [Staphylococcus aureus subsp. aureus COL]  ali follow..  16  4.............................................................................................................EVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVA----------DNYVENVEEHLSVGDEVDVKVLSIADDGKISLSIKK.......................................................................................................................................... 75
2 -13.600IDP01668 hypothetical protein GBAA0060 [Bacillus anthracis str. `Ames Ancestor`] GBAA0060 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  15  4.............................................................................................................EVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVA----------DNYVKDINDHLKVGDQVEVKVINVEKDGKIGLSIKK.......................................................................................................................................... 75
3 -12.300IDP01255 gene: yugI; general stress protein 13 BA_5132 [Bacillus anthracis str. Ames]  ali follow..  17  6.............................................................................................................TTGVVVTGKVTGIQDYGAFVALDAETQGLVHISEIT----------NGYVKDIHDFLKVGDTVEVKVLSIDEHRKMSLSLKA.......................................................................................................................................... 78
4 -9.270IDP91671 VK03_VACCC [Vaccinia virus Copenhagen]  ali follow..  13  9............................................................................................................PNAGDVIKGRV-YEKDYALYIYLFDYPHSE----------LAESVKMHMDRYVEYRDKLVGKTVKVKVIRVDYTGYIDVNYKR.......................................................................................................................................... 83
5 -8.920IDP90187 gene: CPXV043 CDS; CPXV043 protein AAM13490.1 [Cowpox virus (Brighton Red)]  ali follow..  13  9............................................................................................................PNAGDVIKGRV-YENDYALYIDLFDYPHSA----------LAESVQMHMDRYFKYRDKLVGKKVKVKVIRVDYTGYIDVNYKR.......................................................................................................................................... 83
6 -8.340IDP90294 eukaryotic translation initiation factor 2 alpha subunit, putative [Toxoplasma gondii ME49] TGME49_113230 [Toxoplasma gondii ME49]  ali follow..  13  33............................................................................................................PDVEDLVMVKVNRIADLGAYVSLLEYNEGMILMSELS----------KRRFRSVNKLIRVGRHEVVMVLRVDPKKGIDLSKRR.......................................................................................................................................... 108
7 -7.240IDP04311 50S ribosomal protein L27 [Bacillus anthracis str. Sterne] BAS4340 [Bacillus anthracis str. Sterne]  ali follow..  17  1MLRLDLQFFASKKGVGSTKNGRDSQSKRLGA-------------------KRADGQTVSGGSILYRQRKIYPGVNVGRGDDTLYAKVDGVVRRDRKQVSVYPVAQE............................................................................................................................................................................................................................... 95
8 -6.720IDP05163 putative flagellar basal-body rod protein [Bacillus anthracis str. Ames] BA_1719 [Bacillus anthracis str. Ames]  ali follow..  10  4..................................................................................LYIGSMGMMNYMQRI---------------NVHSNNVANAQTTGFKMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPAATHVNLVQGNIQMTNSFFVTSKNNETFLTRDGSFTLNSDRYLQTTSGAFVMGENNERIRIPEGAKVAVQADGTLYDAVTQNNIARLQTKTVGAEAQRENKSFTLAEGNIADLPNGVGTVKN---MLENSNVDMTKEMAQRMISASQRVMTSFDKIYEKEANEILR.... 257
9 -5.720IDP05440 hypothetical protein BA_3272 [Bacillus anthracis str. Ames] BA_3272 [Bacillus anthracis str. Ames]  ali follow..  13  11ALGIAALSGTNVPGLELTKASAASIESNFSTLEGRVVEVDNGVIVVKSKQYEEPVSVYID-----SLSNVKVGDEVKATGSMMRNFTEYMVATAVENTTNKLGMHMKEDGSPDYVIGEVAKVGTMEDQGDGATKYVVVEYPSLNGKKVIIDVFLTKGQV------FHTGEKVKIDMKYVGWGGSSINWNTTDHIEKVYE-------------------------KSNVENNDDVWI............................................................................................. 211
10 -5.050IDP90323 hypothetical protein CT082 [Chlamydia trachomatis D/UW-3/CX] CT082 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  11  39..........SKATETSAAEQQALISSGTELDYVTDLQQSEGKYKKTLDKTSKSPKTKLKGKVRAGTKGFLTGFGT--RASRISARKAGMSMIPSQMEYVKKKGNRVSPEMQNFYLGALWSPTSDVSSITENCLGATALSTTPLLTTMQDPVSIEHLSSGEITALASFNPNVRTASLN---EQTINAWTEARLGGEMVSTLL---TSSLLRRA------------PTVSNEGMVDVSDMGNQTTSLSMEGLVNTVVDDPASAEEEKKTGELSLEEMAAMAKMMAALLSSGQ...................................... 314
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.