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Query: [J] KOG4600 Mitochondrial ribosomal protein MRP7 (L2), from COG1018

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAMATSMSLNLIGAFKGLSLSSTSSFLRGDLSFSPKTSFTVTLPLENLQAPIPLTIESAHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGLVKFEKFGPDRKKISVYPREIVPENPNSYRARKRENFRLQREKKKARRENYSYTLPTPELVLASASVDDAEANPECLast
1 -52.400IDP04311 50S ribosomal protein L27 [Bacillus anthracis str. Sterne] BAS4340 [Bacillus anthracis str. Sterne]  ali follow..  49  2..................................................LRLDLQFFASKKGVGSTKNGRDSQSKRLGAKRADGQTVSGGSILYRQRGTKIYPGVNVGRGGDDTLYAKVDGVVRFERLGRDRKQVSVYPVAQ....................................................... 94
2 -8.160IDP02611 M23/37 family peptidase [Bacillus anthracis str. `Ames Ancestor`] GBAA_pXO1_0111 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  437.......................................................TQYVFRTSIGVQLGDWTGAQVGQGKQVPDINHAQPGDLIF---ENPGHVA--IYMGNQKMIHIGDNKGVQITG...................................................................... 505
3 -7.350IDP02124 gene: spr; putative outer membrane lipoprotein [Yersinia pestis CO92] YPO1275 [Yersinia pestis CO92]  ali follow..  14  25SACSSPQASNVNNTQTEMRAVNDKDGLLLQASQDEFEAMVRNVDIKSKILEQYAGWKGVRYRLGGSSKRGIDCSAEQFGMKKVQRTKLRPGDLVLFRAGST-HVG--IYLGNDKFVHASTSAGVTISN...................................................................... 171
4 -7.310IDP01409 porin, putative VC0972 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  11  5.................FKRTLLGAAVAMASTGAFAASETGAIGVLSDFNVQAYGVAAISAFYQEDSNGYDYENESRIGFR--ASKDMFDN-FMQIESGYVGEDGKGSTLGARDTFLGLQGGKVRFGRM..................................................................... 118
5 -7.190IDP05196 putative phage cell wall hydrolase [Clostridium difficile 630] CD0961 [Peptoclostridium difficile 630]  ali follow..  26  561.......................................................MVWAFKRGAGINRVSADQSKDSRGKLLCNINDVKAGDLVFKGKGNVHHVG--LYIGNDQYIHAPQTGVVKISS...................................................................... 638
6 -7.190IDP05353 putative phage cell wall hydrolase [Clostridium difficile 630] CD2903 [Peptoclostridium difficile 630]  ali follow..  26  561.......................................................MVWAFKRGAGINRVSADQSKDSRGKLLCNINDVKAGDLVFKGKGNVHHVG--LYIGNDQYIHAPQTGVVKISS...................................................................... 638
7 -6.930IDP02632 gene: iap; P60 extracellular protein, invasion associated protein Iap [Listeria monocytogenes EGD-e] lmo0582 [Listeria monocytogenes EGD-e]  ali follow..  17  317.NTNTNTNTNTNNTNTNTPSKNTNTNSNTNTNTNSNTNANQGSSNNNSNSSASAIIAEAQK--GGNGPTTFDCSGAKAGISLASTTRIKPGDLVFDYGSGISHVG--IYVGNGQMINAQDNG-VKYDN...................................................................... 466
8 -6.750IDP06214 gene: minC; septum formation inhibitor [Helicobacter pylori 26695] NP_207844 [Helicobacter pylori 26695]  ali follow..  7  43.AVIGFLEKNHALLQYFLIIFKYDIESEVKAVLRKHQLLFLETNRVLNGRHIKTMPLKDETDHPKPNHSKTEPKTTIYERHIRSGEEIYTNHLIF-----NIHNGAKIISEGCVSVYGVCEGAIV......................................................................... 164
9 -6.730IDP02025 hypothetical protein lmo0394 [Listeria monocytogenes EGD-e] lmo0394 [Listeria monocytogenes EGD-e]  ali follow..  18  138.......................................................TQYVYSKGVKKSIPRTAKQQYASAKKIKAKE-LKKGDLIFNYGKGVAHVG--IYVGNGKMLNAQNNG-VKYDT...................................................................... 207
10 -6.620IDP05565 gene: spl; peptidoglycan lytic protein P45 [Listeria monocytogenes EGD-e] lmo2505 [Listeria monocytogenes EGD-e]  ali follow..  16  233.ALREATSSNVGQESSSSDTSTPSKKSNTTKNVASNDNNSAPSAATPSSGGYSAMISAANAQ-GATGPSAFDCSGRAAGVQYAAASKIKPGDLVFNYGSGIAHVG--IYVGGGQMINAQNNG-VKYDN...................................................................... 382
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.