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Query: [P] COG0004 Ammonia permease, from COG1018

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFQKILIIGVSTLLLLTSPIMGNAWAQVPGTTPPADTGDTAFMLISAALVLLMTPGLAFFYGGFVRSRNILNTLMMSFVLMAIVGVTWVLWGYSLSFAPGLPFIGGLQWFGLNGVGLETTGYLQGSEPANVVSYAGTIPHQAYMIYQAMFAIITPALISGAIAERMSFRAYCLFVLLWSTFIYTPLAHMVWAKGGFLGLYGGLGALDFAGGTVVHISSGVSALVAAIVLGPRKTHPDRLSPPHNVTFILLGAGLLWFGWFGFNAGSALSVASSTSGSFITNPATTAFVATNTSAAAGALMWLILEGVLRGKPTAVGAATGAVAGLVGITPAAGFVTPLASILIGFITAFVCFYAVSFKHKLNVDDALDTYPVHGVGGTVGAILTAFFATAEVNSGGKNGVLKGNFGELGVELAAIVIAYVIAAVGTWIILKIIDATVGLRVKEEAEYQGLDISEHGEEAYNSEFSDRIVPLast
1 -84.700sp|Q9H310|RHBG_HUMAN(removed signalp:1-27) Ammonium transporter Rh type B OS=Homo sapiens GN=RHBG PE=1 SV=2  ali follow..  17  1..........................................VLFAVFVRYNHKDAALWHRSNHSNADNEFYFRYPSFQDVHA--MVFVGFGFLMVFLQRYGFSSVGFTFLLAAFALQ---WSTLVQGFLHSFHGGHIHVGVESMINADFCAGAVLISFGAVLGKTGPTQLLLMALLEVVLFGINEFVLLH----------LLGVRDAGGSMTIHTFGAYFGLVLSRVLYRPQLEKSQGSVYHSDLFAMIGTIFLWIFWPSFNAALTALGAG----------QHRTALNTYYSLAASTLGTFALSALEDGRLDMVHIQNAALGGVVVGTSSEMMLTPFGALAAGFLAGTVSTLGYKLESKFKVQDTCGVHNLHGMPGVLGALLGVLVAGLATHEALIAEGQRSATSQAMHQLFGLFVTLMFASVGGGLGGLLLKLPFLDSPPRLPALRGPSSLAGAWRA........... 414
2 -79.300sp|Q9UBD6|RHCG_HUMAN(removed signalp:1-27) Ammonium transporter Rh type C OS=Homo sapiens GN=RHCG PE=1 SV=1  ali follow..  16  12.....................................................HWWSERTHKNLSDMENEFYYRYPSFQDVHV--MVFVGFGFLMTFLQRYGFSAVGFNFLLAAFGIQ---WALLMQGWFHFLQDRYIVVGVENLINADFCVASVCVAFGAVLGKVSPIQLLIMTFFQVTLFAVNEFILLN----------LLKVKDAGGSMTIHTFGAYFGLTVTRILYRRNLEQSKESVYQSDLFAMIGTLFLWMYWPSFNSAISYHGDS----------QHRAAINTYCSLAACVLTSVAISSAKKGKLDMVHIQNATLAGGVAVTAAEMMLMPYGALIIGFVCGIISTLGFVLESRLHIQDTCGINNLHGIPGIIGGIVGAVTAASASLEVYGKNGDWTARTQGKFQIYGLLVTLAMALMGGIIVGLILRLPFWGQPSDENCFEDAVYWEMPEG............ 414
3 -77.800sp|Q02094|RHAG_HUMAN(removed signalp:1-28) Ammonium transporter Rh type A OS=Homo sapiens GN=RHAG PE=1 SV=2  ali follow..  17  4.........................................................VLEQLNITKPTDMGIFFELYPLFQDVHVMIFVGFGFLMTFLKKYGFSSVGINLLVAAL----GLQWGTIVQGILQSQGQKFNIGIKNMINADFSAATVLISFGAVLGKTSPTQMLIMTILEIVFFAHNEYLVSE----------IFKASDIGASMTIHAFGAYFGLAVAGILYRSGLRKGHESAYYSDLFAMIGTLFLWMFWPSFNSAIAEPGDK----------QCRAIVNTYFSLAACVLTAFAFSSLHRGKLNMVHIQNATLAGGVAVGTCADMIHPFGSMIIGSIAGMVSVLGYKFTTKLRIHDTCGVHNLHGLPGVVGGLAGIVAVAMGASNT-----------SMAMQAAALGSSIGTAVVGGLMTGLILKLPLWGQPSDQN......................... 367
4 -68.200sp|Q02161|RHD_HUMAN(removed signalp:1-36) Blood group Rh(D) polypeptide OS=Homo sapiens GN=RHD PE=1 SV=3  ali follow..  12  1...............................................................SLEDQKGLVASYQVGQDLTV--MAAIGLGFLTSSFRRHSWSSVAFNLFMLALGVQ---WAILLDGFLSQFPSGKVVITLFSIRLATMSALSVLISVDAVLGKVNLAQLVVMVLVEVTALG--------------VISNIFNTDYHMNMMHIYVFAAYFGLSVAWCLPKPLPEGTEDTATIPSLSAMLGALFLWMFWPSFNSALLRSPIE----------RKNAVFNTYYAVAVSVVTAISGSSLPQGKISKTYVHSAVLAGGVAVTSCHLIPSPWLAMVLGLVAGLISVGGAKCNRVLGIPHSSIMGYNFSLLGLLGEIIYIVLLVLDTVGAGNG----MIGFQVLLSIGELSLAIVIALMSGLLTGLLLNLKIWKAPHEAK......................... 364
5 -66.000sp|P18577|RHCE_HUMAN(removed signalp:1-36) Blood group Rh(CE) polypeptide OS=Homo sapiens GN=RHCE PE=1 SV=2  ali follow..  11  1...............................................................SLEDQKGLVASYQVGQDLTV--MAALGLGFLTSNFRRHSWSSVAFNLFMLALGVQ---WAILLDGFLSQFPPGKVVITLFSIRLATMSAMSVLISAGAVLGKVNLAQLVVMVLVEVTALG--------------VISNIFNTDYHMNLRHFYVFAAYFGLTVAWCLPKPLPKGTEDRATIPSLSAMLGALFLWMFWPSVNSPLLRSPIQ----------RKNAMFNTYYALAVSVVTAISGSSLPQRKISMTYVHSAVLAGGVAVTSCHLIPSPWLAMVLGLVAGLISIGGAKCNRVLGIHHISVMHSIFSLLGLLGEITYIVLLVLHTVWNGNG----MIGFQVLLSIGELSLAIVIALTSGLLTGLLLNLKIWKAPHVAKY---FDDQVFWKFPHLAVG...... 380
6 -7.360sp|Q8TEB9|RHBD1_HUMAN Rhomboid domain-containing protein 1 OS=Homo sapiens GN=RHBDD1 PE=2 SV=1  ali follow..  14  30.........................................................................................................................................VTLATLALNIWFFLNPQKPLYSSCLSVEKCYQQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLGSRWFA---YVITAFSVLTGVVYLLLQFAVAEFMDE--PDFKRSCAVGFSGVLFALKVLNN-------------HYCPGGFVNILGFPVPNRFACWVELVAIHLFSPGTSFAGHLAGILVGLMYT.............................................................................................................................................. 206
7 -7.020sp|Q5BKX6|S45A4_HUMAN Solute carrier family 45 member 4 OS=Homo sapiens GN=SLC45A4 PE=1 SV=2  ali   13  55.................................................................................................................................................................................................................................................PRELMRLCLCHLLTWFSVIAE-EGDPKAPSNSTAWQAYNAGVKMGCWGLVIYAATGAICSALLQKYLDRVIYVLGTLGFSVGTAVMAMFPNVYVAMVTISTMGIVSMSISYCPYALLGQYQYIHHSPGNSKRGFGIDCAILSCQVYISQILVASALGGVV----DAVGTVRVIPMVASVGSFLGFLTATFLVIYPNVSEEAKEEQKGLSSPLAGEGRA........... 290
8 -6.880sp|Q9Y2W3|S45A1_HUMAN Proton-associated sugar transporter A OS=Homo sapiens GN=SLC45A1 PE=2 SV=4  ali   11  70.................................................................................................................................................................................................................................................PKALRTLCVNHFLGWLSFEGMPKAPHTSEAYQKYNSGVTMGCWGMCIYAFSAAFYSAILEKLEEFLSVRTLYFIAYLAFGLGTGLATLSRNLYVVLSLCITYGILFSTLCTLPYSLLCDYKFAGSSADGTRRGMGVDISLLSCQYFLAQILVSLVLGPLT----SAVGSANGVMYFSSLVSFLGCLYSSLFVIYEIPPSDAADEEHRPL.................... 294
9 -6.880sp|P54852|EMP3_HUMAN(removed signalp:1-29) Epithelial membrane protein 3 OS=Homo sapiens GN=EMP3 PE=2 SV=1  ali follow..  10..............................................................................................................................................................................................................................................................LWYDCTWNNDTKTWACSNVSENGWLKAVQVLMVLSLILCCLSFILFMFQLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAIHAECFALAWVAFPLALVSGIIY................................................................................................................ 127
10 -6.810sp|P00414|COX3_HUMAN Cytochrome c oxidase subunit 3 OS=Homo sapiens GN=MT-CO3 PE=1 SV=2  ali follow..  13  14.......................................SPWPLTGALSALLMTSGLAMWFHF-----HSMTLLMLGLLTNTLTMYQWW-YGMILFITSEVFFFAGFFWAFYHSSLAPTPQLGGHWPPTGITPLNPLEVPLLNTSVLLASGVSITWAHHSLMENNRNQMIQALLITILLGLYFTLLQASEYFESPFTISDGIYGSTFFTGFHGLHVIIGSTFLTICFIRQLMFHFTSKHHFGFEAAAWY--VDVVWLFLYVS................................................................................................................................................................................................................ 255

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 8 0 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.