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Query: [U] COG0811 Biopolymer transport proteins, from COG1018

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTAELNFLDLFLKASIVVQLVIVILISFSIISWAIIIQRSRILTNALKEARTFEDRFWSGEDLNKLYEGLSNRRDGLTGSEQIFCVGFKEFSRLKQVNPDAPEAIIKGTMRAMNLAMNREIESLENRVPFLATVASVSPYIGLFGTVWGIMHAFMALSGAKQATLQMVAPGIAEALIATAIGLFAAIPAVMAYNRLSLRVNAIEQDYGNFIDEFTTILHRQAFGKAPHLast
1 -9.910sp|Q96LR9|APLD1_HUMAN Apolipoprotein L domain-containing protein 1 OS=Homo sapiens GN=APOLD1 PE=2 SV=2  ali follow..  16  59.........................................................................................................RGRLHGQVLREVARRLERLRRRSLVANVAGSSLSATGALAAIVGLSLS-----VTLGTSLLVSAVGLGVATAGGAVTITSDLSLIFCNSRELRRVQEIAATCQDQMREILSCLE......... 170
2 -9.480sp|Q9BWW8|APOL6_HUMAN Apolipoprotein L6 OS=Homo sapiens GN=APOL6 PE=2 SV=1  ali follow..  13  50.........................................................................................................KEDLKGNIDKALADDIDKTHKKFTKANMVATSTAVISGVMSLLGLALA------TGGGSLLLSTAGQGLATAAGVTSIVSGTLERSKNKEAQARAEDILPTYDQEDREDEEEKAD........ 162
3 -9.060sp|Q9BPW4|APOL4_HUMAN(removed signalp:1-21) Apolipoprotein L4 OS=Homo sapiens GN=APOL4 PE=2 SV=3  ali follow..  12  95.........................................................................................................RWKIQESIERVIANEIEKVHRGCVIANVVSGSTGILSVIGVMLAPFTA--------GLSLSITAAGVGLGIASATAGIASSIVENTYTRSAELTASRLTATSTDQLEALRDILRD........ 203
4 -9.030sp|Q9BQE5|APOL2_HUMAN Apolipoprotein L2 OS=Homo sapiens GN=APOL2 PE=1 SV=1  ali follow..  11  89.........................................................................................................KRELEDHIRKALAEEVEQVHRGTTIANVVSNSVGTTSGILTLLGLGLA-----FTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQARNLDQSGTNVAKVMKEFVGG........ 201
5 -8.810sp|O14791|APOL1_HUMAN(removed signalp:1-27) Apolipoprotein L1 OS=Homo sapiens GN=APOL1 PE=1 SV=5  ali follow..  10  121.........................................................................................................KSELEDNIRRALADGVQKVHKGTTIANVVSGSLSISSGILTLVGMGLA-----FTEGGSLVLLEPGMELGITAALTGITSSTMDYGKKWWTQAQAHDLVIKSLDKLKEVREFLGE........ 233
6 -8.760sp|O95236|APOL3_HUMAN Apolipoprotein L3 OS=Homo sapiens GN=APOL3 PE=2 SV=3  ali follow..  11  160.........................................................................................................KRKIQESIEKALANGIEEVHRGCTISNVVSSSTGAASGIMSLAGLVLA------TAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEAEASRLTATSIDRLKVFKEVMRD........ 272
7 -8.730sp|O60242|BAI3_HUMAN(removed signalp:1-25) Brain-specific angiogenesis inhibitor 3 OS=Homo sapiens GN=BAI3 PE=1 SV=2  ali   12  2............................................................................................................AKCGVVSTTALSATTASNAMASLWSSCVVLPLLAL---MSAVLAM---------TDKRSILFQILFAVFDSLQGFVIVM----VHCILRREVQD.......................... 81
8 -8.510sp|Q9H7V2|TM90B_HUMAN Transmembrane protein 90B OS=Homo sapiens GN=TMEM90B PE=2 SV=1  ali follow..  10  184...............................................................................................................................LSVFSMLCCFWP-LGIA----AFYLSHETNKAVAKGDLHQASTSSRRAVLSITIGTGVYVGVAVALIAYLSKNNHL......................... 258
9 -8.240sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane translocase subunit Tim17-A OS=Homo sapiens GN=TIMM17A PE=1 SV=1  ali follow..  8  35..............................................................................................................KGFRNSPVGVNHRLRGSLAIKTRAPQLGGSFAVWGGLFSMIDSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLTRFASAQFPNGPQFAEDPSQ. 153
10 -8.210sp|Q9BWW9|APOL5_HUMAN Apolipoprotein L5 OS=Homo sapiens GN=APOL5 PE=1 SV=1  ali follow..  8  110.........................................................................................................KFELEQNIKETLADQVDTTHELLTKTSLVASSSGAVSGVMNILGLALAPVTAG----GSLMLSATGTGLGAAAAITNIVTNVLENRSNSAARDKASRLGPLTTSHEAFGGINWSE........ 222
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.