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Query: [M] COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein), from COG1018

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTISKLWVSSLALLATVSLPLQAASPVTVGSKIDTEGALLGNMILQVLESHGVKTVNKIQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWKNAKQGFEKVKKLDAEQNKLVWLTPAPANNTWTIAIRQDIAEKNKLSSLADLSRYLKEGGTFKLAASAEFIERADALPAFEKAYDFTLNQNQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKGVQPIYAPAPVVRESVLQAYPQIADWLQPVFASLDEKTLQQLNARIAVEGLDAKKVAADYLRQKGWVKLast
1 -6.850sp|A6NIQ7|PGM52_HUMAN Putative PGM5-like protein 2 OS=Homo sapiens PE=5 SV=2  ali follow..  11  1..........................MVVGSDGRYFSRTAIEIVVQMAAANGIGR-GQNGILSTPAVSCIIRKGGIILTGGPGGEFGVKFNVANGGPAPDVVSDKIYQISKTIEEYAICPDLQIDLSRLGRQEFDLENKFKPFRVEIVDIKSLLTGPSQLKIRVDAKVLCDELGAPANSAINCVPLEDFGGQHPDPNLTYAMTLLEAMKGGEYGFGAAFDADGD----RYMILGQNGFFVSPSDSLAIIAANLSCIPYFRQMGVRGFGRSMPTSMALD........................... 286
2 -6.820sp|Q13405|RM49_HUMAN 39S ribosomal protein L49, mitochondrial OS=Homo sapiens GN=MRPL49 PE=1 SV=1  ali follow..  11  88...............................................................................................................................................................................................................................RSRMHNIPVYKDITHGNRQMTVIRKVEGDIWALQKDVEDFLSPLLGKTPVTQVNEVTGTLRIKGYFDQEL-KAWLLEKGF.. 166
3 -5.680sp|Q9GZN8|CT027_HUMAN UPF0687 protein C20orf27 OS=Homo sapiens GN=C20orf27 PE=1 SV=3  ali follow..  11  2..................AAANKGNKPRVRSIRFAAGH----------EGSHSHVHFDEKLHDSVVMVTQESDSSFLV---KVGFLKILHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSVVPVPEGYSVKCEYSAHKEGVLKEEILLACEGGTGTCVRVTVQARVMDRHHGTPMLLD............................................................................................................................. 152
4 -5.680sp|P25391|LAMA1_HUMAN(removed signalp:1-15) Laminin subunit alpha-1 OS=Homo sapiens GN=LAMA1 PE=1 SV=2  ali   12  140...................................................................................................................................................AATVRQHIRAEPFYWRLPQQFQGDQLMAYGGKLKYSVAFYSLDGVGTSNFEPQVLIKGGRIRKQVIYMDAPAPENGVRQEQEVAMRENFWKYFNSVSEKPVTREDFMSVLSDIEYIL--IKASYGQGLQQSRISDISMEVGRKAEKLHPEEEVASLLE 295
5 -5.440sp|Q13085|ACACA_HUMAN Acetyl-CoA carboxylase 1 OS=Homo sapiens GN=ACACA PE=1 SV=2  ali   14  22......................ADHYVPVPGGPNNNNYANVELILDIAKRIPVQA-----ASENPKLPELLLKNGI-----FMGPPSQAMWALGDKIASSIVAQTAGIPTLPWSGSGLRVDWQENDFSKRILNVPQELYEKGYVKDVDDGLQAAEEVGYPVMGKGIRKVNNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQRRHQKIIEEA----PATIATPAVFEHMEQCAVKLAKMVGYVSAGTVE--FLELNPRLQVEH.................. 296
6 -5.440sp|O15212|PFD6_HUMAN Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 SV=1  ali follow..  15  38............................................................................................................................................................................................................................TENNIVKEELALLDGSNVVFKLLGPV-LVKQELGEARATVGKRLDYITAEIKESQLRDLERQSEQQRETLAQLQQEFQRAQA... 120
7 -5.270sp|Q96RF0|SNX18_HUMAN Sorting nexin-18 OS=Homo sapiens GN=SNX18 PE=1 SV=2  ali   11....................................................................................................................................................................KKEYQKVGQSFRGLSQAFELD--------QQAFSVGLNQAIAFTGDAYDAIGELFAEQPRQDLDPVMLLALYQGHLANFPDIIHVQKGKAWPLEQVIWSVLCRLKGATLTAVPLWVSESYSTGEEASRDVDAWVFSL.... 140
8 -5.130sp|Q6JVE5|LCN12_HUMAN(removed signalp:1-19) Epididymal-specific lipocalin-12 OS=Homo sapiens GN=LCN12 PE=2 SV=1  ali follow..  13...............................QSFQGNQFQGEWFVLGLAGNSFRPEHRALLNAFTATFELSDDGRFEVWNAMTRGQHCDTWSYVLIPAAQPGQFTVDHGVEPGADREETRVVDSDYTQ-FALMLSRRHTSRLAVLRISLLGRSWLLPPGTL-----------DQFICLGRAQGLSDDNIVFPDVTG............................................................................................................. 165
9 -5.110sp|Q15124|PGM5_HUMAN Phosphoglucomutase-like protein 5 OS=Homo sapiens GN=PGM5 PE=1 SV=2  ali follow..  10  36GQRNYLPNFIQSVLSSIDLRDRQGCTMVVGSDGRYFSRTAIEIVVQMAAANGIGR-GQNGILSTPAVSCIIRKGGIILTASHCGGPAPDVVSDKIYQISKTIEEYAICPDLRIDLSRLGRQEFDLENKFKPFRVEIVDPVDIYLNLLRTIKGLLTGPSQLKIRIDAMHGVMGPYVRKVLCDELGA-EDFGGQHPDPNLTYATTLLEAMKGGEYGFGAAFDADGD----RYMILGQNGFFVSPSDSLAIIAANLSCIPYFRQMGVRGFGRSMPTSMALDRVAKSMKVPVYETPAGWRFFSNL.... 370
10 -4.970sp|O00763|ACACB_HUMAN(removed signalp:1-24) Acetyl-CoA carboxylase 2 OS=Homo sapiens GN=ACACB PE=1 SV=3  ali   12  14.................IAKRIPVQAVWAGWGHASENPKLPELLCKNVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDD-------------------------------LQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEA----PATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVE--FLELNPRLQVEHPCTEMIADVNLPAAQL.. 281

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.