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Query: [S] COG2311 Predicted membrane protein, from COG1018

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MERNVTLDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAITPRDAWTWAFLDLIGQVKFLTLFALLFGAGLQMLLPRGRRWIQSRLTLLVLLGFIHGLLFWDGDILLAYGLVGLICWRLVRDAPSVKSLFNTGVMLYLVGLGVLLLLGLISDSQTSRAWTPDASAILYEKYWKLHGGVEAISNRADGVGNSLLALGAQYGWQLAGMMLIGAALMRSGWLKGQFSLRHYRRTGFVLVAIGVTINLPAIALQWQLDWAYRWCAFLLQMPRELSAPFQAIGYASLFYGFWPQLSRFKLVLAIACVGRMALTNYLLQTLICTTLFYHLGLFMHFDRLELLAFVIPVWLANILFSVIWLRYFRQGPVEWLWRQLTLRAAGPAISKTSRLast
1 -13.700sp|Q68CP4|HGNAT_HUMAN Heparan-alpha-glucosaminide N-acetyltransferase OS=Homo sapiens GN=HGSNAT PE=1 SV=2  ali   19  116.PRLRSVDTFRGIALILMVFVN---YGGGKYWYFKHASWNGLTVADLV-------------FPWFVFIMGSSIFLSMTSILQRIAWRSFLLICIGII-DKVRIPG-VLVTYFVVAVLELLFAKPVPE.................................................................................................................................................................................................................................................................. 250
2 -8.780sp|Q68CP4|HGNAT_HUMAN Heparan-alpha-glucosaminide N-acetyltransferase OS=Homo sapiens GN=HGSNAT PE=1 SV=2  ali   28  266.PRLRSVDTFRGIALILMVFVN........................................................................................................................................................................................................................................................................................................................................................................... 286
3 -8.550sp|Q9Y6A9|SPCS1_HUMAN Signal peptidase complex subunit 1 OS=Homo sapiens GN=SPCS1 PE=1 SV=2  ali follow..  12  6......................................................................................................................................................................................................................................................................................................SSLPTQMDYKGQKLAEQMFQGIILFSAIVFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPW-PIYRRHPLKWL.................. 78
4 -8.380sp|Q9HBA0|TRPV4_HUMAN Transient receptor potential cation channel subfamily V member 4 OS=Homo sapiens GN=TRPV4 PE=1 SV=2  ali   12  6IQKILFKDLFRFLLVYLLFMIGYASALVSLLNPCANMKVCNEDQTNCTVPTYPSCRDSETFSTFLLDLFKLTIGMGDLEMLSSTKYPVVFIILLVTYIILTF----VLLLNMLIALMGETVGQVSKES................................................................................................................................................................................................................................................................. 129
5 -8.340sp|Q68CP4|HGNAT_HUMAN Heparan-alpha-glucosaminide N-acetyltransferase OS=Homo sapiens GN=HGSNAT PE=1 SV=2  ali   10  57............................................................................................................................................................................................................SIVMAFLGVQAGK--ILLYYKARTKDILIRFTAWCCILGLISVALTKVSENEGFIPVNKNLWSLSYVTTLSSFAFFILLVLYPVVDVKGLWT-GTPFFYPGMNSILVYVGHEVFENYFPFQWKLKDNQSHKEHLTQNIVATALWVLIAY------------ILYRKKIFWKI......... 213
6 -7.990sp|Q9HD45|TM9S3_HUMAN(removed signalp:1-28) Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2  ali follow..  10  201....SFMMVIFLVGLVSMILMRTLRKDYARYSKEEEMDDMDRDLGDEYGWKQVDVFRPSSHPLIFSSLIGSGCQIFAV---------SLIVIIVAMIEDLYTERGSMIFVYAATSPVLYARQGGRRWIKQMFIGAFLIPAMVCGTAFFINFIAIYYHASRAIP---------------------------FGTMVAVCCICFFVILPLNLVGTILGRVNAVPRPIPEKKWFMEPAVIVCLGGILIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFLAEDYRWQWTSFLSAASTAIYVYMMYGLFQTSFYFGYMA------VFSTALGIMCGAIGYMGTSAFVRKYTNVKID.................... 561
7 -7.980sp|Q5FWE3|PRRT3_HUMAN(removed signalp:1-27) Proline-rich transmembrane protein 3 OS=Homo sapiens GN=PRRT3 PE=1 SV=3  ali   16  183...VLVASALRSAYML----------------------TDPYGSQARLGVRGGLVLYNLPFPLLLT-ALAALTLLGLGAGLPPPLQNPLLLGAVALVHGVGLLATDLLSTWSVLNLLTQGL-------SCAWGAAVALGTLCL.................................................................................................................................................................................................................................................. 292
8 -7.890sp|Q9H461|FZD8_HUMAN(removed signalp:1-27) Frizzled-8 OS=Homo sapiens GN=FZD8 PE=1 SV=1  ali   15  1......LDNLRGFVLA-YLFIGTMFLLAGFVSLFRIRSVIKQQDGPTKTHKLEKLMIR---LGLFTVLYTVPAAVVVRPDYAVFMLKYFMCLVVGITSGVWVWSGKTLESW.................................................................................................................................................................................................................................................................................. 136
9 -7.850sp|Q5T742|CJ025_HUMAN(removed signalp:1-28) Uncharacterized protein C10orf25 OS=Homo sapiens GN=C10orf25 PE=2 SV=3  ali follow..  18  3..........................................................................................................................................................................................................................................................................................................RDLKSCNRPCVWSRLLKP------------SSLSNLETAYFPQILRFLRPWYFSRSHLNYHQKAPARWEWLYSIYRKGTKAQRRN.. 76
10 -7.770sp|P41440|S19A1_HUMAN Folate transporter 1 OS=Homo sapiens GN=SLC19A1 PE=1 SV=3  ali follow..  13  59FTREQVTNEITPVLSYSYLAVLVPVFLLTDYLRYTPVLL--LQGLSFVSVWLLLLLGHS-HMQLMELFYSVTSSYIFSLVRPARYQR-----VAGYSRAAVL--GVFT---SVLGQLLVTVGRVSFSTLNYISLAFLTFSVVLALFLKRPKRSLFFNRDDRGRCETSASELERMNPGPGGKLGHALRVACGDSVLARMLRELGDSLRRVYNGAADAASTLLGAITSFAAGFVKIRWARWSKLLIAGVTATQAGLVFLLAHTRHPSSIWLCYAAFVLFRGSYQFLVPIATFQIASSLSKELCALVGVNTFFATIVKTIITFIVSDVRGLGLPV-RKQFQLYSVYFLILSIIYF................................. 447
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 2 6 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.