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Query: [O] COG3175 Cytochrome oxidase assembly factor, from COG1018

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTQTPASPDPTDDARAAERGLNRAMLGKLAVVVVMMFGFGYAMVPLYKKICELTNINVLTTRDLDGGALRNTQVDQARTVTVEFDSNSQGPFRFRPVKNSMEVHPGEINQIVYEVVNKEGRSVSAQAIPSYAPKQATEFFKKIECFCFKQQTLAGNESREMPVVFVIDPDLPKDVKTITLSYTFFEIGKPVAQTPTVPGKGTLast
1 -83.000sp|Q9Y6N1|COX11_HUMAN Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Homo sapiens GN=COX11 PE=1 SV=3  ali follow..  31  72.RRPKSSNPFTRAQEEERRRQNKTTLTYVAAVAVGMLGASYAAVPLYRLYCQTTGLGGSAVAGHASDKIENMVPVKDRIIKISFDVHASLQWNFRPQQTEIYVVPGETALAFYRAKNPTDKPVIGISTYNIVPFEAGQYFNKIQCFCFEEQRLNPQEEVDMPVFFYIDPEFAEDVDLITLSYTFFEAKEGHKLPVPGYN... 276
2 -8.590sp|Q92545|TM131_HUMAN Transmembrane protein 131 OS=Homo sapiens GN=TMEM131 PE=1 SV=2  ali   15  19....................................................VQGQGTTENLRVAGKLPGPGS-------SLRFKITEALLKDCTDSLKLRE--PNFTLKRTFKVENTGQLQIHIETI-EISGYSCEGYFKVVNCQEFT---LSANASRDIIILFTPDFTASRVIRELKFITT................... 137
3 -8.420sp|P43308|SSRB_HUMAN(removed signalp:1-17) Translocon-associated protein subunit beta OS=Homo sapiens GN=SSR2 PE=1 SV=1  ali follow..  14  1......................................................................................EEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSF--PPEDFGIVS---VKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEDGPVVIGSTSAPGQ.. 113
4 -8.230sp|P43307|SSRA_HUMAN(removed signalp:1-20) Translocon-associated protein subunit alpha OS=Homo sapiens GN=SSR1 PE=1 SV=3  ali follow..  70.................................................................................................VKGEDFPANNIVKFLVGFTNKGTEDFIVESLDARYPQDYQFYIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGN............ 163
5 -8.150sp|Q9Y334|G7C_HUMAN(removed signalp:1-28) Protein G7c OS=Homo sapiens GN=C6orf27 PE=2 SV=4  ali   15  63.........................................LLSTPRPFSLELIGQDAAGRRLHRAAP----QPSTVVPVLLELSGPSG------------FLAPGSKVPLSLRIASFSGPQ-----DLDLRTFVNPSFSLTSN----SRAHLELNESAWGRLWLEVPDSAAPDVVMVTVTAG................... 181
6 -7.800sp|Q96S42|NODAL_HUMAN(removed signalp:1-21) Nodal homolog OS=Homo sapiens GN=NODAL PE=1 SV=2  ali follow..  15  210..........................................................WGKRHRRHHLPDRSQLCRKVKFQVDFNLIGWGSWIIYPKQYNAYRCEGECPNPVGEEFHPTNHAYIQSLLKRYQPHRVPS-----TC-C------APVKTKPLSMLYVDNGRVLDHHKDMIVE..................... 321
7 -7.540sp|P18075|BMP7_HUMAN(removed signalp:1-29) Bone morphogenetic protein 7 OS=Homo sapiens GN=BMP7 PE=1 SV=1  ali follow..  12  285..........................................................RMANVAENSSSDQRQACKKHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFINPETVPK-----PC-C------APTQLNAISVLYFDDSSILKKYRNMVVR..................... 397
8 -7.420sp|Q7Z5Y6|BMP8A_HUMAN(removed signalp:1-24) Bone morphogenetic protein 8A OS=Homo sapiens GN=BMP8A PE=2 SV=2  ali follow..  14  261..........................................................LPGIFDDVRGSHGRQVCRRHELYVSFQDLGWLDWVIAPQGYSAYYCEGECSFPLDSCMNATNHAILQSLVHLMKPNAVPK-----AC-C------APTKLSATSVLYYDSSNILRKHRNMVVK..................... 373
9 -7.420sp|P34820|BMP8B_HUMAN(removed signalp:1-24) Bone morphogenetic protein 8B OS=Homo sapiens GN=BMP8B PE=1 SV=2  ali follow..  14  261..........................................................LPGIFDDVHGSHGRQVCRRHELYVSFQDLGWLDWVIAPQGYSAYYCEGECSFPLDSCMNATNHAILQSLVHLMMPDAVPK-----AC-C------APTKLSATSVLYYDSSNILRKHRNMVVK..................... 373
10 -7.370sp|P61812|TGFB2_HUMAN(removed signalp:1-20) Transforming growth factor beta-2 OS=Homo sapiens GN=TGFB2 PE=1 SV=1  ali follow..  10  281..........................................................KRALDAAYCFRNVQDNCCLRPLYIDFKRDLGWKWIHEPKGYNANFCAGA---CPYLWSSDTQHSRVLSLYNTINPEASAS-----PC-C------VSQDLEPLTILYYIGKTPKEQLSNMIVK..................... 389

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.