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Query: [S] COG3859 Predicted membrane protein, from COG1018

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MCASKRSFFMSNSKFNVRLLTEIAFMAALAFIISLIPNTVYGWIIVEIACIPILILSFRRGLTAGLVGGLIWGILSMITGHAYILTLSQAFLEYLIAPVSLGIAGLFRQKTASLKLVPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISAILTAIAAFVILIIFVKKFPKLFIYSNYLast
1 -10.400sp|Q6NV75|GP153_HUMAN(removed signalp:1-26) Probable G-protein coupled receptor 153 OS=Homo sapiens GN=GPR153 PE=2 SV=2  ali follow..  7  5......SVGAKQKKWKPLEFLLCTL--AATHMLNVAVPIAT--------YSVVQLRRQRPDFEWNEGLCKVFVSTFYTLTLATCFSVTSLSYH----MWMVCWPVNYRLSNAKKQAVHTVMGIWMVSFILSALPAVGWHDTSERFYTHGFIVAEIGLGFGVCFLLLVGGSVAMGVICTAIALFQTLAVQV. 177
2 -10.400sp|Q9BSE2|TMM79_HUMAN Transmembrane protein 79 OS=Homo sapiens GN=TMEM79 PE=1 SV=1  ali follow..  10  194..........DREWLRAVASVGAALILFPCLLYGAYAFLPFD-LIYTLRCGVFATFPIVLGILVYGLSLLCFSALRPFGEPRREVEIHRRYVAQSVQLFILYFFNLA-------VLSTYLPQDTLKLLPLLTGLFAVSLIYWLTFA---VGRSFRGFGYGLTFLPLLSMLMWNLYYMFVVEPERMLTATE. 373
3 -9.590sp|Q96P66|GP101_HUMAN Probable G-protein coupled receptor 101 OS=Homo sapiens GN=GPR101 PE=2 SV=1  ali follow..  10  13.NSSHTCMPLSKMPISLAHGIIRSTVLVIFLAASFIFNLLVTDLLQISLVAPWVVATSVPLWPLNSHFCTALVSLTHLFAFASVNTIVVVSVDRYLSII-------YPSKMTQRRGYLLLYGTWIVAILQSTPPLYG----WGQAAFDERNIWGASPSYTILSVVSFIVIPLIVMIACYSVVFCAARRQH. 223
4 -9.510sp|Q8NC44|F134A_HUMAN Protein FAM134A OS=Homo sapiens GN=FAM134A PE=1 SV=3  ali follow..  12  41.EEAATAEAVGRLATTLWLRLR-AVLAAAQRLLVWEKPLHSLVTAAALNGLFWLLSSSSLRPFFLLSVSLLAYFLSGARPHLLSVPELCRYLAESWLTFQIHLQELLQYKRQNPAQFCVRVCSGCAVLA-VLGHYVPGIMI------------SYIVLLSI--LLWPLVVYHELIQRMYTRLEPLLMQLDY 245
5 -9.490sp|P18089|ADA2B_HUMAN(removed signalp:1-31) Alpha-2B adrenergic receptor OS=Homo sapiens GN=ADRA2B PE=2 SV=2  ali follow..  13  1...................LVILAVLTSLRAPQNFLVSLAAADILVATLIIPFSLANELLGWYFRRTWCEVYLALDVLFCTSSIVHLCAISLDRYWAVS-------YNSKRTPRRIKCIILTVWLIAAVISLPPLIYKGDQGPQPRGRPQCKLNQEAWYILASSIGSFFAPCLIMILVYLRIYLIAKRS.. 171
6 -9.480sp|Q8N6U8|GP161_HUMAN G-protein coupled receptor 161 OS=Homo sapiens GN=GPR161 PE=2 SV=1  ali follow..  11  37................ITIFVCLGNLVIVVTLYKFVFSLTLSNFLLSVLVLPFVVTSSIRR-IFGVVWCNFSALLYLLISSASMLTLGVIAIDRYYAVL------VYPMKITGNRAVMALVYIWLHSLIGCLPPLFGSSVEFDEFKWMCVAAWHREPGYTAFWQIWCALFPFLVMLVCYGFIFRVARVKA. 219
7 -9.350sp|Q96Q45|AL2S4_HUMAN Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 4 protein OS=Homo sapiens GN=ALS2CR4 PE=1 SV=1  ali follow..  11  218.ELIKTTENIDVSMDVKPSWTTRDVALTVHRAFRMIGLFSHG-FLAGCAVWNIVVIYV-------LAGDQLSNLSNLLQQYKTLAYPFQSLLYLLLALSTISAFDRIRNFLALDPTALASFLYFTALILSLSQQMTSDRIHLYTPSSVNGSLWEAGIPWIVVNLVVALLVGLSWLFLSYRPGMDLSEEL.. 412
8 -9.290sp|Q9NPL8|CC001_HUMAN(removed signalp:1-24) Transmembrane protein C3orf1 OS=Homo sapiens GN=C3orf1 PE=1 SV=2  ali follow..  13  31WDRLRELFGKDEQQRISKDLANICKTAATAGIIGWVYGGIPAFIHAKQQYIEATRGFIRYGWRWGWRTAVFVTIFNTVNTSLNVYRNKDALSHFVIAGAVTGSLFRINVGLRG-LVAGGIIGALLGTPVGGLLMAFQ...................................................... 186
9 -8.910sp|P20309|ACM3_HUMAN Muscarinic acetylcholine receptor M3 OS=Homo sapiens GN=CHRM3 PE=1 SV=1  ali follow..  9  86...............NILVIVSFKVNKQLKTVNNFLLSLACADLIIGVISMNLFTTYIIMN-ALGNLACDLWLAIDYVASNASVMNLLVISFDRYFSIT-------YRAKRTTKRAGVMIGLAWVISFVLWAPAILFWQYFVGKRTVPPGEQFLSEPTITFGTAIAAFYMPVTIMTILYWRIYKETEKRT. 262
10 -8.750sp|P08912|ACM5_HUMAN Muscarinic acetylcholine receptor M5 OS=Homo sapiens GN=CHRM5 PE=2 SV=2  ali follow..  9  48...............NVLVMISFKVNSQLKTVNNYLLSLACADLIIGIFSMNLYTTYILMGWALGSLACDLWLALDYVASNASVMNLLVISFDRYFSIT-------YRAKRTPKRAGIMIGLAWLISFILWAPAILCWQYLVGKRTVPLDEQFLSEPTITFGTAIAAFYIPVSVMTILYCRIYRETEKRT. 224
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.