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Query: [CHR] COG1052 Lactate dehydrogenase and related dehydrogenases, from COG1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRCVVFNLREEEAPYVEKWKQSHPGVVVDTYEEPLTAKNKELLKGYEGLVVMQFLAMEDEVYDYMGACKLKVLSTRTAGFDMYNATLLKKHGIRLTNVPSYSPNAIGEYALAAALQLTRHAREIETFVRKRDFRWQKPILSKELRCSRVGILGTGRIGQAAARLFKGVGAQVVGFDPYPNDAAKEWLTYVSMDELLSTSDVISLHMPATKDSHHLINAKTIAQMKDGVYLVNTARGAVIDSQALLDSLDKGKIAGAALDAYEFEGPYIPKDNGNNPITDTVYARLVAHERIIYTPHIAFYTETAIENMVFNSLDACTTVLRGEPCAAEIKLLast
1 -3.480PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]  ali follow..  1........................................................IKEELVRCIWFGQH---------IEKKNLRTDDGLRLEILSPGWWNNEEGPDFKHAEFFLEGKGLIRGSVEIFASDWIHHKHENQKTYDAVCLHVVMWNDLKGRCVKNFSGKVIPQITLSLYLEAELDEIIETIDVGSYIGNKQVIPGYCNLEMWIGGFLDYAGDERILQKAKKYEKWIENKPFERVLYEAIMES................................................................................ 196
2 -2.540HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  12  3..............................................................................................................................................SLLLSTFAMMGL--IGFFVAGVIKLIASAADSLAFYSSHQEEL-ARLKRIRKLHQKVATLITESALSDEEYGSDGREDFSR-------VTK---HPGDNRGFYHGVSPGESERGLMDYFYPE................................................................... 115
3 -2.260PB155142 _HOMD.0127537_ bfor_c_1_1790 Tannerella forsythia ATCC 43037 [677748 - 680894] ORF  ali follow..  21  12...................................................................................................................................................................................................INPEDIESQTILKDAAATALYGSRG----ANGVVLITTKSG............................................................................................... 48
4 -2.150PB015879 Q5LJ14_BACFN/120-411 PB015879; Pfam-B_15879;  ali follow..  25................................................................................FGYDIWTKYNTTEPVVEA--YEGELNPDMKAKIAELGKTDPKAAQELYRSVSYHVDHGN-GLDCYGPTLGGGTTA-AGDTIVYPYCYATQEILDNGPLRVVKGDSTIIETRIITLDAGSYCNKTVVSYTNLKETMPLAVGIVLHEDGAIVADAANGYMTYVDPTDNAGGDNGKIFVGAAFPTLVKAVLFPEKEKKELRGGADGHVLAISEYEPGADFTYYWGAAWSKADIKDSAAWNAYMADQKVRNPLTV 292
5 -2.010PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)  ali follow..  11  1..............................................................................................................................................................................WSVREGELLDEAVDFCRKRGL--EFYAVNSNMP---EEEADMSALRSRKVSADMYIDDRNLGGLPDWGVIYEMVHN................................................................................. 71
6 -1.880PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;  ali follow..  31.......................................................................................................................................................GGSGEMVCYDIA-----GIQMSFNQLTMDSTFQ---------SIAPVKKFLQIDYCIEGCYEVEYQNGTVSFLGEGDLCVTDLS----RQVFVSSRLPLRKYRGVTLFLVEKAQHTLSAGFPQAEINLAGIVNELCGKEQSLLVKSREDVERIFGKLSEVDERIQAPYYWIKTME..... 189
7 -1.770PB060121 Q64SA7_BACFR/1-251 PB060121; Pfam-B_60121;  ali follow..  10  21........................................................LTQEMIEDLPLCILKEI-GKGGYSPVLPMRVTNENGEVIESRSRFAFIRMDSGEVDVVFYPTLKSSPLECYNEEQQKQLLDG----------------KSIIADVAMADGRRSKAFVQIDEETKQ-------------MYVPTPIIARNLKVLAEVMHL-GTVEVNGMQHGEPLLHNKTG............................................................................................... 184
8 -1.700PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  10  142..............................................................................................ISAFPINLIEGFSNFLFCIVVA--PNLVKILNKNLPNLWGEKFTFTFKEIKFKKINF------SSIFLSFISIFALTIFAYNTFLNLAQIVRINTIRPNPNPNPNEIFNFDLNNLPIENGLLTVEAIWFLQSKMELTDTATVIIINNTAYVNINKNSKHNNFAVNYLKSEENNWYLTGRDFPLLGLFVEKFFKDDVEVFSPKI-----PALYFVVNNSTKNIFSSV........... 358
9 -1.650PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  11  25.............................................................................................................................................TDEKGCVSITIGLGDI-HIRAVKDGFFAEAMGHVRTQEEITLILNDNLLSKDWVTDSWEMCEVEAPKENRIESYYDEALAENVPDAKEILHLAKGNFLTVDGLLKTLKVKDYKDVTASVLEDH................................................................... 191
10 -1.480HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;  ali follow..  13  107....................................................................................................................................................LCYVGKRGMGA-------------LEFEPSSPINGMNESSVLHIEELTELAKSVFTDRMAFQVQLRQEGRNILDILKVGT....................................................................................................... 173

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.