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Query: [J] COG1097 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain), from COG1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDKKIVIPGDLLSENQKKAGYGTYVKNDKIYSSLCGIENLKEDKVGVIPLAGAYIPSANDVVIGIVIVVTPSNWIFDIAAPYDGLLHVSEYPRRVESREMPEILNVGDSVILRVKDVDSSMKVELALRDPSLHKLKTGQIIKVESVKVPRVIGHGGSMISMLKKETNCSIFVGQNGRIWIDGKDEDIELLSKALRKIELEAQRSGLTDRIYNFLKNERIRQKESKPVGFFKNETEGVTATKEDHSEEIYRKIDVLLDPKNLast
1 -3.060PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  13  108.......................................................................TQWPVQIK--DGAKLLIAADCTAYAYASFHEKFIKGHVTLIGCPKLDSVDYSEKLTEIIRRNDIQSVTIVRMEVPCCGGLEMAAKKALQDSGKFIPWQATISIDGRI.................................................................................. 222
2 -2.640HGC00787 gi|162657578|dbj|BAAX01002027.1|2.0 TMP01033;  ali follow..  6  79.......................................................................................................FEFGRPVFFKAGETKTAQTDGKTEKKMLKYFSFTGTVSYVDGDRMVITVPDSAPLLELQQADVPVGVQLSFDETSY--------KMMFDALDRTMKAKNNR--LAYLRDLF.............................................. 180
3 -2.300PB015954 Q6WBB3_BIFBR/1-225 PB015954; Pfam-B_15954;  ali follow..  9  1METSELWHGSSHVIKHPEYGRGFYCTRSIELAKEWACAGLDDGFANRYTLTTDGLTFLD-----SQPPYTILNWLALLVENRRFQPAVAAQGIEYLRQVFLPDISQADVIVGYRA----DDSYFSFARTFVNNAISLDQLAD-LGELGKQIVLISSRAFAALQFQDCEIA----RASTYHVLRNERDVTAREAYRRKSAEADIDGL---MRDIIREKVTNDDPR.................................... 225
4 -2.020HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  7  3.................................................................................................................................................................................VWI----PMARTATEKLEMRGQSVTVENIGKTVTDGFEKVSNNVNDFISSDKPRNFFQKLADVFVLVIGFILKFFIILAG... 80
5 -1.810HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;  ali follow..  12  148...................................................................................................................................................................DEPDSELLINFDGTLY................................................................................. 163
6 -1.770PB001232 gi|126647001|ref|ZP_01719511.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]gi|126577049|gb|EAZ81297.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]  ali follow..  11  12..NEIISP---LSRSAFA--EGTFFDQDVLVNKIEGYIYIIEDLWAIHSLNLKTSLLGFQIQATQQYAPVAENVWMPLTHTYRXXXXXXXXXXXXXEVTMNPDLAYVPEIIDEKVQEVPDEVAEFDKSESALEQLAKEQPTTRKEYRKMINEYEKEAMKEREEPEVIRESYY-RELSYWLTEKEIEGYNRDDSLAVVEAAKVSEVDSVAKKARSKFRPLDFMNGATYNFGAGKSFGFKQNWTKISFNTVEGFKLGMGLF. 303
7 -1.750PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]  ali follow..  7  1MKIKFLS---VITSCLDDDNNIEYSPDATIHAFALDTAGLGSYKFTIDQLSREIY-NEDSLPVH--ADTIIDKILIKTLTTASGVVTMKDKSGNDSVININDSIDLREPLTIKVWSTEALAGISPNQTKEYTIKVN-GKMQDEIIGEQKTIEFNNKILTYSVVEGKNLKVYQNSNYSNWTAAGTN........................................................................... 202
8 -1.640PB008694 Q9F6U1_BACTN/1-190 PB008694; Pfam-B_8694;  ali follow..  11  3...................................................RRSVPKS----IWRTPPRKRRKWRFTVWRRSWA------ATSKPPSGNLPKSGETRKQPTIKNEFINEKRKMRMNLPKVKMLQVSKCLIGLAVMMLQS-------------VADNLRDMLCGN----WESVEGKPDVLIYK.................................................................... 118
9 -1.520PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;  ali follow..  9  12............................................................................................................................................................PLSNFLLEGTIMKLTVYFDGTFWFAGKEPKDSDIWNFIIPQPKKMNPKRMQRVLNKSKKQSAVSTKAQAEMQKLHEALKKEKKSQSKEKRQALKQYKYQLKQEK 155
10 -1.500PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  8  1.......PVCGAKVSLEILNYAEFASVTELYTDEKGCVSITIGL--------------GDIHIRAVKDGFFAEAMGHVRTQEEITLILNDNLLSKDWVTDS---------WEMCEVEAPKDSVKYQFNLTREQQATNRSKLREAKLLRENRIESYYDEALAENVPDAKEILHLAKG---------NFMEIYRFLTVDGNNVDSNQDRLALLKTLKVKDYKDVTASVLEDHLKVRESSYKYRPVYKDNIAHE......... 212
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.