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Query: [C] COG1145 Ferredoxin, from COG1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MHHSHHLEIYEKLREKLNKAPIGLPKTVSGVEKELLSVLFDEEEAKIAVHMPFIRFTAEQLAERTGKSLEYVEKILNEMAKKGTVWKGEKDGQTYYRLFPVIVGFAETPFWPGPGKDPRQEKLARLWSQYRKEGFLDEIGDREHPIMRALPERDTISEKSEILPYEDAVKLVKERDYIAVGYCPCRVMARLVGEGCRHSIENCIHMGSVGKYMVEHGLGRRISADEAIEILRQSNREGLVHLTERSKHVATICNCCSDCCVFFKAVHEAKHPNTIAHSSYLATVDTSRCIACGICMLRCPMKAIKAKINREPASVDAEKCLGCGVCVPTCPMEAIELVERDELLELPDGMTYVQELLADKGRDPSGLFLast
1 -5.460HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;  ali follow..  22  18............................................................................................................................................................................................................................................................................................MKKMIAYCGLDCEKCDAYIATINDNQELILPEHINCQGCNMCIRQCALE................................... 93
2 -4.370PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;  ali follow..  13  1..........................................................................................................................................................................................................................................................................................................................MDPPVCFGCYLLLFACPIIFASIMKKEFIGRTAKSLSLALAIFSG......... 50
3 -4.010PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;  ali follow..  21  33............................................................................................................................................................................................................................................................................................ETDASTQYNDLLERCHFGE------------DKPACKHCPICYQPARREAIKAIMR............................ 84
4 -3.610HGC00870 gi|163286116|dbj|BABD01024572.1|2.0 TMP01154;  ali follow..  9  21LFHAPDKDTLLKIEMALFPLHVRLRRVAKEDYVQPLGALAGVKDIPRIEETYEGDELSDTLFVFAFFSDNRLNQALAALRKSGAYKAILTPTNQNWNALQCFSEIRREHETIQKQLKGNKEQAEE................................................................................................................................................................................................................................................... 149
5 -3.540PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]  ali follow..  18  16....IDENAYQKLLRYLEAVKRSFAGTAGS------DEIIADIEARIAELFYEKMENERQV-----ITQKEVDAVIAIM................................................................................................................................................................................................................................................................................................. 79
6 -3.380PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;  ali follow..  6  14...................................................................................................................................................................................................................................................................................FPYEFAVCAPRTDCPKREQCLRASAYDGVLARGLQKITVINPLIPTSEQGCKAFADNTPVLFA.............................. 76
7 -3.170PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  13  429LAEPLYCHATHILSFLPNTEISHRPNADRDYLFQKLGDEFTRTQL--------------EEAVAMGIKENTALTWLKRLTKHGKLISMDGKG.................................................................................................................................................................................................................................................................................... 507
8 -3.160PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]  ali follow..  10  59VSFSNASSAATKVNSAWKHYKLEPIVDGEAAAKEIISHLVESLSGKTKTTATSNEVDLDLSMLSDTFDQKKFEKDLGAAIDEANSSYDEQAGK--FTVEKARSN-AELELASLAETVDLSKLGNDAYEPLNGTLTDDQIQAACNAANNFLGVNVTLKLNGEKVDGSSVLQWIADPANPTLDTSQISSWAAELANGFNTGSTRWWTRADGKQCAVEGGDGWSIDSSSLAKQVEDAINNK.................................................................................................................................. 350
9 -3.040PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  14  48FTSDLERRRYLILRRKTRKV---WPYA------KLASERLSELNARL-ASIKSKSERRKYTKIVQKYIEEQFAAELKKLTTEGQILVKRQTGVTTFQLIKNLRSGWRAFWYDT---------TAGLFDIELKSEYNPVNNREDFLIEDILQQRNILDNQPSVLNID.......................................................................................................................................................................................................... 201
10 -2.780PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  9  16..KSDSPDLKTAMLGRIRADEPR--------------KVWTPSDFVDLA------------------SRDAVDKTLQRLTKAEALRRIDRG---LYDQPG-----------FNKLTQKPNPPDPRSVIDAVGRRDQTRMLVDGMTAANDLGLTDAVPAKIVVHTDARRRAIKLGNATITF............................................................................................................................................................................................ 147
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.