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Query: [M] COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein), from COG1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTISKLWVSSLALLATVSLPLQAASPVTVGSKIDTEGALLGNMILQVLESHGVKTVNKIQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWKNAKQGFEKVKKLDAEQNKLVWLTPAPANNTWTIAIRQDIAEKNKLSSLADLSRYLKEGGTFKLAASAEFIERADALPAFEKAYDFTLNQNQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKGVQPIYAPAPVVRESVLQAYPQIADWLQPVFASLDEKTLQQLNARIAVEGLDAKKVAADYLRQKGWVKLast
1 -5.010PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;  ali follow..  1MKVKTSILLLLMIATALPSFGGNGNGNGTDSLQ---------------ATRYVTRATMYGVGYTNVFDTYLSP-------EYKGIEFRISRETMRMTTLGDGNVSVQNFFQANLAY---THNRVDNNNTFAGLVNWNYGLHYQFRITDNFKLLAGGMGDFNGGFVYN-LRNTNNPASARAYINLDASGMAIWHTKIKNYPLALRYQV.................................................................................................. 182
2 -4.320HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;  ali follow..  12  1MKKLLLAMIAVAALISFAACDHNET---YADQRDRELDSINAF----LRNENIKVINEAEFESNGIYMQVINDGCQNVLCRFTEYCLANRAKICDDAITLNTSGTFEGYFVDIKKSLLANTYNSSYYGTVSATVPSGWLIPFTWIKVGRLITADDELAHVRLLVPHTYGTTSASASVYACLYDIRFQAAR................................................................................................................... 238
3 -3.940HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;  ali follow..  10  1MKTLKITFVMLMTALFLVLPSCSKDDVNVTLTAFQQKYPDVKNVKWEILVGAYEAEFIYS--SENGQHIVLDKVEAQAYITQGGKWVRSEFDVTKDYQD-PRAVRETIAAKGKKVDDVKLFDWSDRNDYFYVEFDEPDSE..................................................................................................................................................................... 153
4 -3.880HGC00933 gi|162753228|dbj|BAAZ01012194.1|2.0 TMP01261;  ali follow..  12  86...........................................................................................................................................................................................................................RSHAYALEQGTFDQKAFYEAFGIFDNQSI--EKSLVSKNPLVRILALLDRRLGKRRLLALEESMEQELDWVRAFYVIRMQAEGLM. 168
5 -3.720PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  10  1MKKTIFYSLFSALFMLTSCSMFE-----IDNYEEPSETIWGEVV----EATGKRVLTDQGSEGIRVRLTELSWGDPDFYCMMDGTFQNTKIFKGEYNVRIDGPFIPLVRENTDGT--------LLHDGSVNTEISGTTKVKFEVQNVEFVGNPQVSNGVIKAQVRVT.......................................................................................................................................... 159
6 -3.580PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;  ali follow..  16  1MKRNYFFTMLAAVLLAVAGANAQE------SAEFRPAELAGQLCHYVSEIPDVPGILKPSLSDDGRIVNFTMIPGKDAIITGYGT............................................................................................................................................................................................................................ 86
7 -3.360PB012823 Q5LCS8_BACFN/1-272 PB012823; Pfam-B_12823;  ali follow..  7MIKYIATLLLTVLFVACNNGKGQQPSEE--NEDPKAKEILQGIWLD---------------DETETPLMRIIGDTI-YYSDAQSAPVYFKILKDTLYTYGKDVTHYQIDKQ--------------SEYSFWFHSLADNIIKLHKSEDPNDTLAFSFKSVEIIPTYTEVTKKDSVVMFDGVRYRAYVYIN--------PSQMKVVKTTYSEDGISMDNIYYDN----VMHICVYEGKKSLYAKDITKQMFVDVIPTDFLQQAILSDMNFIGIDRKGYH-YQALVCIPESPVCNLVNLTISFDGKLN 266
8 -3.260PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  10  1MKKLLCMWMVVCGLLLIPGNMKGQSTSVTGGKAVTFENLQGSLAATEAEKKMKEYCAKVGIVEGVFNYVFNSDSTFTSALKYSVSPEDKTVTLRYTVGNKKLTVSTLTAHVVLSGNELTLL----FNADKLLKFLSTVSSISSNTTLKAINKLASEYDGMMLGFD............................................................................................................................................ 204
9 -3.180PB032818 Q5LA03_BACFN/1-211 PB032818; Pfam-B_32818;  ali follow..  11  31...................................................................................................................................VYFQSVIAVNLGITNIRDVANFKRLFKVATQGGKLGLAEKSASRKMLMQDYGISESFFKEIDTS-------------------------------KKNCRTQNDVQAYLFMYQGLMMLMGNLMQWKFRMPAIFKKALRSMTEKTVHDVCTKTVWKADDVHKTARQYKERLGFSE 184
10 -2.860HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;  ali follow..  11  43.....................................................................................................................................................................................YGLSYTTFTQEIQGQPEISVNIDSETGPQAYATFNVKVTNTGKVPGKTSVQI---------YGQAPYTEGGLEKVAIQLLNF-EIVSVKVDLQYIASY----DMEHDNGDGTTGTYVLDPG... 161

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.