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Query: [S] COG1814 Uncharacterized membrane protein, from COG1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst METTSNSKLVEVARKAALDEYKEYVTYSVLARVERNKARRAVLERLAEQEREHFQFWNKFAGVKPPAWRFRLYAYFMAFLRLILGVTFVAKLMERGEEAIARYKSAEPLLSGPDREALRRIIKDEEEHERALIAQLDEAIVKYMGALVLGLADAIIEITGAHAGTLGTTNNTVAAGVIGLIVGVGAAISMASASYLQTKHEVGKSPSVAALVTGVGYIAAVALMSLPYFLIHDVYLAFAASIAVGVMLTFLLTFQSAVYADRDFKFEFLQTVGLLLGTAFLTYLLGEWLGSLFGIRNILLast
1 -5.620HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  14  6......................................................................................................................................................LREIFLSVIAFLAGAGVSAGVFAFVLVIGVVPRIL-----------RCSRIENIILIENVMICGVVAGNISSVLDTAYNLGFANMPKVPVSNICGNIIIAIYGLCVGIFVGAVALAEILHTFPIGLGIIVISMAIGKALGALY...... 148
2 -4.260PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)  ali follow..  15  29......QGLLHDMSKYSPTEFLVGCRYYKGYMSPNNAERADRGYSSAGRNKHHLEYWIDYAVSKPGDDKTHTKMEGMKMVCEMFIDRVSASKNYQKEKYTDKSALEYYEKSVDHYMIHPDTKAMLEYLLVMLSVKGEEYTYSYIKKEVL...................................................................................................................................................... 180
3 -3.510PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]  ali follow..  9  2...................DTIDNFLDAMFAPYPASTRLTDAKVELAMMEDAYADAIASGMTHNEAVGRVITDFGNLQEIAPVLGIA--DDLTAAEKAPQPEAAPAPAGTEGVGAPSRPRVTLPEAQELAEARRRGAASLGLSVAILVVPFNEDTATFLALAVDL--------PLVALGVIMLLTRSPDPIVTAWAARLRLEHEDRRMRRLAIAVGLWICAALPLAVVQALPPIGVG-DLSELALALSVVLVALGLWIFLPANWAVQTQQTLI.......................... 292
4 -3.410HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  11  1............................................................................................................................................................TFVWIIVPMARTATEKQSVTVENIGKTVTDGFEKVSNNVNDFISSDKPRNFFQKLADVFVLVIGFILKFFIILAGIFLLPPLVLVVFILVVVTFALLLINGAPLSMAIMGCIGTILFIGIPIFSLIYAI---CSQLFKIRPL. 160
5 -3.160PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali follow..  10  166IKKDSPSEAEMRHAGKVMTELDGTELYSRITERLTDEPMSERLAKAMAVFVDTVN.................................................................................................................................................................................................................................................... 220
6 -3.070PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  5  103KPVMTDAEIAKMLKDQFAQSRKMLDIREKYYNEFSKILSQKQIMKIYQQEKSNMNKFRKEFDRRKGQKPGQ.................................................................................................................................................................................................................................... 173
7 -3.060PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;  ali follow..  9  82.........................................................................................................................................................WFVEPLTYILGSAA----MYQAFMIGNISNKLVPAAIVAQSSIGAKAGSKRGDLAAVMAIGGAATMHLLSLLIFVGFLGTWLVSLVPVEVIEVARLYIMPSLMGAVLVQAIVSMRNVRATVVALGLAVVIQL.............. 211
8 -3.030HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  19  3MTDNNDDVLVKKFFSENRIDVPD------------DGFSRRVMRRLPDRTRRISRLWT................................................................................................................................................................................................................................................. 48
9 -3.030PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  13  258.FQPSDSLMTETLARVYVEQ-KAKQAYRILS--LKYPEKSGFFAQIRAIEKL....................................................................................................................................................................................................................................................... 310
10 -2.930PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali follow..  9  166IWKESPSDEEMRHAGKVMTELDGTELFTRITERLTDEAMSERLAKAMAVFVDTVN.................................................................................................................................................................................................................................................... 220
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.