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Query: [S] COG2311 Predicted membrane protein, from COG1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MERNVTLDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAITPRDAWTWAFLDLIGQVKFLTLFALLFGAGLQMLLPRGRRWIQSRLTLLVLLGFIHGLLFWDGDILLAYGLVGLICWRLVRDAPSVKSLFNTGVMLYLVGLGVLLLLGLISDSQTSRAWTPDASAILYEKYWKLHGGVEAISNRADGVGNSLLALGAQYGWQLAGMMLIGAALMRSGWLKGQFSLRHYRRTGFVLVAIGVTINLPAIALQWQLDWAYRWCAFLLQMPRELSAPFQAIGYASLFYGFWPQLSRFKLVLAIACVGRMALTNYLLQTLICTTLFYHLGLFMHFDRLELLAFVIPVWLANILFSVIWLRYFRQGPVEWLWRQLTLRAAGPAISKTSRLast
1 -3.550PB028090 gi|167758043|ref|ZP_02430170.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]gi|167663940|gb|EDS08070.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]  ali follow..  17  1..................................................................................................................................................................................................................................................................................................................MLFQIYGWQLLGWLLVFAGLILANELARRTKVGGIFCFLIVPAALTVYFIAIYVGAAAEWALNNPTY............ 73
2 -3.280PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF  ali follow..  10  159LKLIRIM----AFSILAYYIIWWGITLVEVYFIQQSFSLAGQPIDIAGSLDFPNGLFEIPFIFIIYEIFAIGVRMREEN.................................................................................................................................................................................................................................................................................................................. 233
3 -3.120HGC00965 gi|163282470|dbj|BABD01028218.1|2.0 TMP01310;  ali follow..  12  29...............................................................................................................................................................................................................................................................................................................SGNEDGMRYLIEAILTVDLWPEPWTLDKTDPALRRREIFPMTEEGRTAVAQYLDAYNAEPERWILDCEPWTPPAPEPDAETQ 135
4 -3.070PB000790 _Gut.Meta.Jp.0111831_ gi|163310496|dbj|BABD01000203.1||3 (- 2591:4589~0 complete)  ali follow..  9  236................................................................................................................................................................................................................FLLAEAAEY-GWISNITPKEAYELGIRSSFEYFGVSEYADQYINSTTRNRLGTSVAFDDTVEPTSEVMTYRDGYTN-----------------TDQIQEVVYNYPTASKTLY--------------------------LTKIITQKYIAQMPYQVLEWNHRRLGLPFFEIPANESD. 376
5 -3.060PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  13  18...............................................................................................................................................................................................................................................................................................................MFNLTKRQLIMAVLIGVPSFFLMKTVMKTNTAVMGMMVIMMPFFFLAMYEKMIQAIFQRPKIRPYVTDNYYAALLRQAKAEK 113
6 -2.990PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  18  14.....................................................................................................................................................................................................................................................................................SIAYRCGAFQLLAQMALRRELPEGVAPARGALTAVIRRTLGAPGTFDNIGLAGHISTGSLYLCTTAFLPLGLPASDFWSQPDAPWTSARVW................. 126
7 -2.970PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;  ali follow..  16  83.....FVEPLTYFPILGSMIGNISNKLVPAAIVAQSSIGAKAGSKRGDLAAVMAITMHLLSLLIFVGFLGTWLVSLVPVEVIEVARLYIMPSLMGAVLVQAIVS--TVVALGLAVVIQLLVVPAFPQLGMFATAVVVISSIIINWVVR............................................................................................................................................................................................................................................. 240
8 -2.730PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;  ali follow..  11  9.............................................................................................................................................................................................................................................................................................IIVYCFGSYMNYMRRQYEIMGYRLPRYFAAVEAGLVAFRFLPPFKWIFGDMIDQVWLMYYGVIPLFLVWGADKFVRSWITFRLRKHQSSRLVNVPKLKK. 125
9 -2.720HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;  ali follow..  8  32................................................................................................................................................................................................................................................................................AGTVLVVGVIAVLLAA---------ALGVSGLIQAQAAAGRSRAAADLAALGGATALSSIVAPGDVVVEVSVEARVLGVSRPAVSSARAGPVD.................... 140
10 -2.670PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;  ali follow..  11  2.................................................................................................................................................................................................................................................................................................................KTLTFKYLKLFLLAVAMLTSCEIEIDDFYDDDNIGGSYYNKSLDLCSRPWADTFYDADGNYCYQELNFYL.......... 73
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Dunbrack RL Jr, Dunker K, Godzik A. Protein structure prediction in biology and medicine. Pac Symp Biocomput. 2000;(12):93-4.