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Query: [O] COG3175 Cytochrome oxidase assembly factor, from COG1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTQTPASPDPTDDARAAERGLNRAMLGKLAVVVVMMFGFGYAMVPLYKKICELTNINVLTTRDLDGGALRNTQVDQARTVTVEFDSNSQGPFRFRPVKNSMEVHPGEINQIVYEVVNKEGRSVSAQAIPSYAPKQATEFFKKIECFCFKQQTLAGNESREMPVVFVIDPDLPKDVKTITLSYTFFEIGKPVAQTPTVPGKGTLast
1 -6.490PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;  ali follow..  13  19.............SFGGNGNGNGTDSLQATRYVTRATMYGVGYTNVFDTYLSPQEYKGIQNFFQANLAYTHNRVDNNNTFAGLVNWNYGLHYQFRITDN-FKLLAGGMGDFNGGFVRNTNNPASARAYINLDASGMAIW------TKIKNYPLALRYQVNLPVI...................................... 187
2 -5.590HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;  ali follow..  13  37.RKRRISKKQQAIYRRRRIVAGTVLLLIIALIVFCVYSLGRGIGAVNSMIHHDEVYAISRDATPAPKKVSNVKDCSASDVTLQLSAASQ------------SVPVGGSLDFTATIVHEGSGNYLSGRVLTITSGQ-ETIYKSDVC---RLLLMAKGDKDVQKVTW..................................... 193
3 -4.900PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]  ali follow..  10  1....PTHARGDRGPARKSAGNNKSGKKTTLFVVLGLIVIVYIVGVVAQVAYPNTIIAGVDVSFSNASSAATKVNSAWKHYKLTVTGD-DFSWTYQPESNEPIVDGEAAAKEIISHNEAFVWPVRLVESLSGKTKTTATS----------NEVDLDQDVDLSMLSDTFDQKFEKDLGAAIDEFNEGRSGTFEANSSYDEQAGK 190
4 -4.430HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;  ali follow..  13  38...................................AYGFGYGL---YTTF-------EIQGQPEISVNIDSETGAPQAYATFNVKVTNT--------------VPGKTSVQIYGQAPYTEGGLE-------KVAIQLLNFEKSS-------ELAPGASEIVSVKVDLQ------------YIASYDMEHDNGDGTTGT.... 155
5 -3.890PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;  ali follow..  11  161...........................................VPIFSIAMAYQQNGGRLDPFVEGLEALETLQDGDRVLISEACNHNRITSACND-----MVQIPNKLEAALGGKKLQIEHAFGREFPELESGGMDGLKLAIHC-CMIDARMKDLHEAGVPVTNYWPDALRRALEPWGVEPPVGTPATPAAAPATAAS... 329
6 -3.640PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  13  183.........TFTFKEIKFKKINFFSSIFLSFISIFALTITFAYNSTFLNLAQIVRIN---------------------TIRPNPNPNPNEIFNF-----DLNNLPIENGLLTVEA--QSKMELTDTATVIIINNTAYVNINKNSV--FAVNYLKSEENRDFPLLLFVEKFFKDDVEVFSIPALYFVVNNSTKNIFSSVGISS 362
7 -3.480PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  2.....................KKTIFYSLFSALFMLTSCSMFEIDNYE---PSETIWGEVVDEATGKRVLTDQGSEGIRVRL------------------TELSWGDNVQHNPDFYCMMD------GTFQNTKIFKGEYNVRID-IPLVRENTDGTLLHDGSVNTEISGTTKVKFGVIKAQVRVTRGVSDEVFREKI..... 171
8 -3.370PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;  ali follow..  10  23..........RKRLVERLKGYLDGLPPETCRRIVLGMLAAFAVLALYTFGRAAYDIGRNDGSRMETGHAGRVELPTPAE........................................................................................................................... 91
9 -3.080PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;  ali follow..  10  5................NNKNKRTSIFKALALCLFAAVSFTFVS-------CD------------------------------DMDIQQSYPFTVETMPVPNKVTKGQTVEIRCELKKTGDANTLYTIRYFQFEGEGTLKMD-------NGITFLPNDRYLLEFIVVVEDN--GNSYELEFDFNNRNVKDDGVITVVPIGN.. 162
10 -2.990HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;  ali follow..  15  133.................................................................................................................PMEESKKEQWSAEVKC-----RAYFFLNLAFYY-MPLKTLSVDEANSISVYSQVEKDLKTAIDLLPVHYL................... 207

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.