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Query: [S] COG3216 Uncharacterized protein conserved in bacteria, from COG1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGKRVLFRRRNPDGLFERLRIYMWPRRSFSRSFQYVSKRILRLNATPTAVAAGVAAGVFASFFPLGSHFAIAAIVCWLISGNMVAAGLGTFVFGNPLTLPFVVGATWETGKIMLHGHMQSDERPAHLSEMLQTLSISQLWAPVLKPMLCGAVPLGLVFGLLFYGITRCGMTAFREKRRKRLAEKGSLLQQQEDIVLSPPLPTRHRRAGGLast
1 -6.840HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  12  5.......................................................................................................................................LLSTFAMMGLTFVIGFFVAGVIKLIASAADSLAFYSSHQEKRIRKLHQKVATLITESALSDEEYGSDGRED... 80
2 -6.630PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;  ali follow..  16  4.......................................LLPLEAMEYEINKGAG-GLYLFIFAGGLVAVLLVVVILYIAGVNQWICIPFGLLSGSLLVWLTFRLNARYGE.................................................................................................. 83
3 -6.610PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;  ali follow..  17  40.....................................................MTAGLILSLLGPAYLVFFADL-MVWVAFLAVAAIFGVLWFVEPLTYFPILYQAFMIGNISIGAKAGSKRGDLAAVMAIGGAATMHLLSLLIFVGFLGTWLVSLVPVEVIEVARLYIM....................................... 178
4 -5.470PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;  ali follow..  7  12..................................YCFGSYMNYMRRQYEIM-GYRLPRAVTWRAL--GYFAAVEAGLVAFRFLPPFKWIFGDMIDQVWLMYYGVIPLFLVWGADKYKTD------------------------------GKSLFSFVRSWITFRLRKHQSSRLVNVPKLKKHVFYGHVCVQHDVKDLPIVHSFSEEE.. 151
5 -4.830PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;  ali follow..  7  4......FKEKIQFSKIRSRSCPFMQQNKFRKAIVAILMPMIKVYEVNDGFNIGSGLLMYFPFSILYFVGFFFDLILF-----NLIEFWSG---NNPVG............................................................................................................... 111
6 -4.430PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;  ali follow..  9  1...................................................................................................................................................MGTIVYLSIRLACACYILYKVCGQKKKIREICDLLYTKLPPVKEKELENVLSEPGGESGIMG 62
7 -4.390PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;  ali follow..  14  128.............................................................................................................................................................................ALKKEKKSQSKEKRQALKQYKYQLKQEKRHQKRQG. 162
8 -4.300HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  8  94.................................................AIYGLCVGIFVGCIAVALAEILHTFPIIY-LRAGLGIIVISMAIGKALGALYYFLTGFVATS.................................................................................................. 158
9 -4.280PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;  ali follow..  11  3...........................................EGIPEQLIRRLS-----DASRLVPLALLAVVAAVIYVWRPLFHGLIYRVAYSP-SLLILVGTTVVAGIALVFWPRMGEDPLESAVTKWSILGT----------IVVAALVLSVAYSIPAGMAEERSLAQDATADAEAVTDFPTVNEENPRIVPEAVANVQTKGS.. 150
10 -3.840PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  8  10..........................................LTKVKSKVMFNLTKRQLICFGMAVLIGVPSFFLMKTVMKTNTAVMGMMV-----IMMPFFFLAMYEKN---------------------------------------GQPLEVILEHMIQAIFQRPKIRPYVTDNYYAALLRQAKAEKEVEEIVRLSQKEKSGEK.. 130
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;