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Query: [R] COG3907 PAP2 (acid phosphatase) superfamily protein, from COG1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MITVPLFATSASGHTVKISKTTRQASTGPSTLNNRSTVPTIKTISLYSLPLSFYFWQVFGLLLVGLLFLALSRSEQLDWLISNYWFDPVGQNFPWEHNKWLDLLNHRLLKMALIATAIAALLWGIYRRNGRLVTTALLFGLGPLVIGILKATSAHSCPWDLVEYGGKALNYVLMDTAPPGAGPGHCFPGGHASSGFAVMALFFLFYPERPRLAMLCWFAGIGLGMLMGFGQIMRGAHFLTHNLWAGWWVWLSQLAAFWIISGYYQRIKGTELast
1 -5.280PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;  ali follow..  11  6.........................................................................................................................................................................................TFPPGRPLSNFLLEGTIMKLTVYFDGTFWFALVEHVNRKGQYKVFRYPFGKEPKDSDIWNFIA....................... 68
2 -4.440PB044572 Q8A533_BACTN/1-343 PB044572; Pfam-B_44572;  ali follow..  10  104...............................................................VVVAEFAIHPADSVDSVWVKLAHTQEEQGWIRETSQAIHFFSDTHASYFMIIFALFVGVYLFRAFRRK-LFLCLLMAFSATVYESMQVFV----PDTWEHF-----FNPTLSP----------FKVPFILSVFLLSIWLFLIVALA----FRQLTPAAAVFYLLGLMSSCIFCYFFFILMTHIYIGYLFLAFFIWVFAKKVHRNISYK 320
3 -3.780HGC00672 gi|162843654|dbj|BABA01001055.1|4.0 TMP00845;  ali follow..  17  6.....................................................................................................................................................................................NTNKQFMVGNGILAFAVIFVVVIFVYMSMRLQQ---------RNFIETYTITLTKGFAGDST............................ 63
4 -3.330HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  10  5.IIVPMARTATEKLEMRGQSVTVENIGKTVTDGFEKVSNNVNDFISSDKPRNFFQKLAVIGFILKFFIILAGIFLLPPLVLVVFILVVVTFALLMGGAGFIYNLSPFGADLINGAPLSMAIMGCI-------TILFIGIPIFSLIYAICSQLFKRPLPTQ----------------------------ARWILLALWLISFILCGVYIHQS------------GMLYDWHNYWNGVHWNRNAVW........................... 208
5 -3.230PB030138 Q7MX14_PORGI/1-113 PB030138; Pfam-B_30138;  ali follow..  10  40.VEQEEQAELDGQSSSHDYSGYRPRIRGTFVEGTQHLKERQLQGETQSTRSGRTLRTLALLIAVCLLSWLVFKV..................................................................................................................................................................................................... 112
6 -3.210PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;  ali follow..  15  1.................................................................MAITSAPPVTTPAPTAQSVAADAAMSRFETQTSRYGSLTMTAGLILSLLGPAYLVFFADLQITAGMVWVAFLAVAAIFGVLWFVEPLT----P-----LGSAAMYQ--------------AFMIGNISN--AIVAQSSIGAKAGSKRGDLAAVMAIGGAATMHLLSLLIFVGFLGTWLVSLVPVEVIEVARLYIM........... 178
7 -3.040PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  9  7.............................................................................................................................................................PRDLTKVKSKV--------------TKRQLICFGMAVLIGVPSFFLMKTVMKTNTAVMGMMVIMMPFFFLAMYEK-NGQPLEV---------ILEHMIQAIFQRPKIRPYVTDN 100
8 -2.960HGC01179 gi|162738527|dbj|BAAZ01025469.1|2.0 TMP01658;  ali follow..  9  1........................................................................................................................................................................................................................VVVSILFQKARKVLNNERGEANYFSTVVFIFIAVLLLAFIIDLFSIISTKQE... 52
9 -2.860PB028090 gi|167758043|ref|ZP_02430170.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]gi|167663940|gb|EDS08070.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]  ali follow..  12  17...............................................................................................................WLLVFAGLILANELARRTKVGGIFCFLIVPAALT------------VYFIAIYVGAANGAEWALNNPTYVHMNSWFHYAKLYAATAGCIGFMMLKYKWKIGKTNWFKVFPFVIVAINILIAVV..................................... 127
10 -2.780PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;  ali follow..  8  1............................................................................................................................MKTLTFKYLKLFLLAVAMINLTSC-DDNIGGSYYNKSLDLCSRPWADTFYDADGNYCYQELNFLDRHGEDYIRVEYPNGRYSESVYSFTWNWLRMVYGPGDVSYLDDVWIRGNVLSGYLDGHDNYV..................... 142
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.