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Query: [S] COG4241 Predicted membrane protein, from COG1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MYQTRPLTEGAVFASLFAVLFVITFFVPFIAFITMWFLPIPFLLYTLRHGLKPAVIVLLVASVVVMLILGPLLLLLALLFGTSGVVMGELYRREKSPFAVLLGGSLSNIAWVLLLFISSIVIMDVNPLVAAQETMRQSMQTAEQLIIGLGQEPSEALKQMEESINQLFYLGPAMVVICGTLLAAVTQLVAAPILKRLRHEVKPLPPFRTWSFPRSFLFYYLAVVVLFMIGFEEGSMPYIAVWNLLPVLEIIMAIQGFAVIFAYFHTKGVAKAVPVIIMILCIIVTPLLYLVRIIGIIDLGFDLRKRMGSQGKLast
1 -4.370HGC01215 gi|162843249|dbj|BABA01001460.1|3.0 TMP01713;  ali follow..  18  4..........................................................................................................................................................................................................................................................VFCVEGFSVDVFIVH-------IREICFPVLFFC............................ 30
2 -4.060PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;  ali follow..  12  1MNEPEQLIRRLSDASRLVPLALLAVVAAVIYVWRPLF-----------------------HGLIYRVAYSPSLLILVGTTVVAGIALVFWPRMGEDPLESAVTKLGTIVVAALVLSVAYSIPAGMAEERSLAQDATADAEAVTDF....................................................................................................................................................................... 127
3 -3.000PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;  ali follow..  16  27.....................................................................................................................................................................................................................................................LLISCVMLLIGILSFASTFELEDKSSTVSMALMVF-------GTGLFLLGIFRLFW........... 75
4 -2.520PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;  ali follow..  14  32LPRAVTWRALGYFAAVEAGLVAFRFLPPFVWLMYYGVIPLFLVWGADKYKTDGKSLFSFVRSWITFRL.................................................................................................................................................................................................................................................... 109
5 -2.400PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  10  21....................................................................................................................................................................................................................................................LTKRQLICFGMAIGVPSFFLMKTVMKTNTAVMGMMVIMMPFFFLAMYEKNGQLEVIL-IQAIFQRPKI 93
6 -2.240PB036876 Q56VH6_BACFR/1-141 PB036876; Pfam-B_36876;  ali follow..  9  6.............................................................................................................................HFKRTIQMYLEQRAAEDALFAKNYRNPAKNIDDCVTYILNYVQKSGCNGFTDGEIYGQAVHYY............................................................................................................................ 68
7 -2.230PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;  ali follow..  8  1......................................................................................................................................MKRKVKSIRKTMWGVYWKLHDKRKRLVERLKGYLDGLPIVLGMLAAFAVLALYTFGRAAIGRNDGSRMETGHAGRVELPT.................................................................................................. 88
8 -1.520PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;  ali follow..  7  37.......................................................................LVAAVCAVILVVAGIIGWNAYSGAKLAEAKEYNALLNGDAADAAAVKAEQVKDSKTVESLGKELKASAPEYEGCVAENAQGLDAAAVKLNEQADWYETHEKSLSKAVRAVVESKAAKRLDDAKTNLTAKLDEASKLLA....................................................................................................... 189
9 -1.490PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali follow..  12  149...................................................................................GQASGSAFEDIDMAVRTIAGKVMTELDGTELYSRITERLTDEPMSERLAKAMAVFVDTVNTTVAQPKTKVFVVLDNIEEF..................................................................................................................................................... 240
10 -1.460PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;  ali follow..  12  1................................................................................................................................................................................................................................................................................MSNILILII---------VLVLGLVAALTEIRHSHKRRAA 32
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 2 6 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.