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Query: [S] COG5373 Predicted membrane protein, from COG1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLEAIALLAFVMALAAFLGGRRSAERLDREIESLKAEIARLAKEGMGEPGPDLATGRPSEAGVPSVAGTEATADGPWSRAREGAGTSHDESAAGRESGDGAIDGPVAPSAAAARAESLESRIGGRWPVWVGGLALALGGYFLVQYSIEAGLLSPAVRLTLAAIFGLALGVAGEVIRRRDVPAIADRFRNAMIPGVLTAAGAVTLFGVVYAAYGIYDFIGTGAAFVLLALVSLATVGLSLLHGQALAGLGLLASLLTPLFVSSGEPRPWVLFGFLAVAWLATLAASRLRRWSVVPTLANAGLGLWGLAYVALATPFEAPPVTFALLVMIAGVALIWPGRAERTAEPSGTTQIGAASEPGAWERLFTPPYLAISISAAIVATVLALLFISPAVDAARFPVSDFVVIVVALAAAGSLRPAAIYAALLAAFGAVAGTWSLTALSGVLAYLDPSFAGSPPEIVVPGRTAMLTAMTLSALFILLGGFVLARRPAGDRQFAALWAGIAAVVPNALLAMSFVMTGSFAFDLPHGLAAFAGGIFLLGLVEWLYRRSAGAGDADVDGGLPALGSFGLFVIGLHAWTDGLVTTLAIALLGAGYSFATRLRSWPVLPWVTVAGAVVILARIAWEPTIVGPGNLGTTPVFNALLPGYGIPALLLVASAYLLQAWPDLRVRNLLQALASLFVLLTLAILVRHAMNRGVLDSSVPTLGEQAIYTLLAIGASGIFMTLDGRSPSPVFRYGGMALGVLSMLSVLGAHLVGLNPYFSGELLGSLPFFDLLLIGYLLPAIGYFGLAWYARGRRPLPYVVALAVSGAILAFAWATLSVRRFWQGQNVADWKGFLQGETYTYSVVWLVLGVLLLVAGSRLDAKSIRIASAVLVFVAVLKVFLVDMSNLEGFLRALSFIGLGAVLIGIGRFYQKILSGSAGNAGEGARRALast
1 -7.430PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;  ali follow..  9  1MGTIVYLSIRLACACYIL----KVCGQKKKIREICDLLYTKLPPVKEKELENVLSEPGGESGIMGSTCFVYLDEDAGKSVAPYMSQPLETAADFIGEEEDVAEEEVECKLPLEEMRMLKEEQEELDGTYPAVDAVSRVVTP------DD--LDNAGNVL-----------------FKLNDADKDEEKSLRAALTLHTIRETDLFEIFSSKNVIDSLMGKYLD................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 199
2 -6.240PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali follow..  9  1MTKVFLIVSVACNVWFLLMLLSDRITETKFVRFLKGAAGLWRSLGTKSEKQDTLHSEASDEDADIIGKSRFRMAPTRTTAAISTQEAAISEKGIELSEEEATFDDGNTETASRPTQVPEDKLDE----------------TFTSISPEE---EPGKGQASGSAF---IDMAVRTIKKDSPSEAEMRHAGKVMTE-LDGTELYSRITERLTDEPMSERLAKAM.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 212
3 -6.200PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali follow..  7  1MTKAFLIVSVAFLFLLFYDRIMDTKLIRFFRHIAGLWRSLDSTVAEQGKDKEIPHADTSDIIGKSRFKMASTRTTAAIPTQEAATSEKGIELSEEEATFDDGNTETVSRPTQVPEDKLDETFTSI-----------------PSELEYGEDKPEDEEPDKKQASGSSIDMAVHTIWKESPSDEEMRHAGKVMTE-LDGTELFTRITERLMSERLAKAMAVFVD................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 217
4 -5.840HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;  ali follow..  12  1MKKLLLAMIAVAALISFAACDHNADQRDRELDSINAFLRNENIKVINEAEFEKRFEARKAGDKAVKLTDTDPNNNEYVLFESNGIYMQVINDGCGDYIAKGKTQN-----------------------------------VLCRFCDDAITLTNDVPAWAAMTDEISVKNTS-----------------GTFEGYFVDIKKSLLANTYNSSY--YGTVSATVPSGWLIPFTWIKVGRLITADDELAHVRLL----VPHTYGTTSASASVYACLYDI............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 232
5 -5.250PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]  ali follow..  11  1MDTIDNFL-----MFAPYPASTRLTDAKVELAMMEDAYADAIASGMTHNEAVGRVITDFGNLQEIAPVLGIADDLTAAEKAPQPEAAPAPAGTEGVGAPSRPRVTLPEAQE------AEARRRGAASLGLSVAILVSTGIFAFRGLSETGLVPFNEDTATFLALAVDLPLVAAWAARLRLEHEDRRMRRLAIAVGLWICAALPLAAGADNGTLNGGDL-SELALALSVVLVALGLWIFLPANWAVQTQQTLGRQEYDYNEENYRDPVIGIVVYWPCVIVAYFVWGAVFQWDKSWVLFPISGLLFGVF............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 353
6 -4.850PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;  ali follow..  8  2................................................................................................AITSAPPVTTPAPTAQSVAADAAMSRFETQTSRYGSLTMTAGLILSLLGPA----LQITAGMVWVAFLAVAAIFGVLWFVE------------TYFPIL----GSAAMYQAFMIGN-----ISNKLVPAAIVAQSSIGAKAGSKRGDLAAVMAIGGAATMHLLSLLPVEVIEVARLYIMPSLMGAVLVQAIVSMRNVRATVVALGLAVVIQLLVVPAFPQLGMFATAVVVISSIIINWV................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 238
7 -4.740PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;  ali follow..  13  1..............................MTLLGDKTASPYDTGTPVPGPGGMAVTYEQVATGGLPVAGLERPVVPRLSAGLKLHGEYQGSGFTEPKYIARRGDGQVVQLSRLLHLVASSVDGS----IETIAHRVSGRFGREVSADN-----VRYLIEQKLDPLGVTVPEGREEEDISAPRSDLLLALKGHRVIFNERRVATIAGALA------LHRPVVVLAVLAGIAVLDVWLFAFFGAITPVLEVL..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 209
8 -3.930PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF  ali follow..  10  1............................................................................................................................SIVYAIGGLLMAVGTGFFIIQDVACIVM----------LIGAICFATMQMRQQYLGTNLTIR---------LRKIMVLADIGFILAGLFMVEDSYGFVKQYLANSIGGYTTYVNIFYHNWVTALEVYTLHRIDYLIEKE......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 130
9 -3.700PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  5  1MKTKFIYVVLMALFLGSQNKERKQRPTPEQMMQMQTNMVRALMLDDATAAKFTPIYEKYLKELRECRMMNFKPRARKDAAQGTEANTAKETPKPVMTDAEIAKMLKDQFAQSRKMLDIREKYYNEFSKILSQKQIM---IYQQEKSNMNKFRKEFDR................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 165
10 -3.560HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;  ali follow..  10  1..........................MAVQRNTSGARTARGAGTGANGPSGGPSQNNRSGKPRKRRISKKQQAVYSLGRGIGAVNSMIHHDEVYAISRDATPAPKKVSNVKDCSASDVTLQLSAA--------SVPVGGSLDFTATIVHEGSGNYLVDGSDSGRVLTITSGQETI--------KSDVCPADSRLLLMAKGDKDVQKVTWNTNA----------------NATLAKCTDESGWAKVNA----GTYVAQLSLKDHPKVKSDPVTFTV............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 239
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.