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Query: [S] COG5395 Predicted membrane protein, from COG1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDPHGKSISQASDRWSGLRNAALGVGAATLIVALTAPGAFTDLGAFAQQVRFQPHAPDFSRIAAAPAVVQVHLFSALTALAIGVVLMMRVKGTTLHKLLGWTWVLAMGSTAVSSLFIREINHGAFSFIHLLSGWTIIGLPGAVYAIKRGKVSAHRKAMTGMFVGGLLVAGVFTFLPGRLLWTVFLGLast
1 -5.480PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF  ali follow..  14  29.....................................................................IVMLIGAICFATMQMRQQYLGTNLTIRR-LRKIMVLADIGFILAGLFMVEDSYGFVKQYLANSIGGYTTYVN-----------FYHNWVVILLIATALEVYTLHRIDYLI....... 127
2 -5.090PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  7  1...................................................................ASYISVLTKVKSKVMFNLTK---------RQL--ICFGMAVLIGVPSFFLMKTVMKTNTAVMGMMVIMMPFFFLAMYEKNGQPLEVILEHMIQAIFQ...................... 89
3 -4.410PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;  ali follow..  8  1......................................................................MH------------IQFSKIRQNKFRKAIVAILMPMILVVSFGN---------------CFGKFAIVKKVYEVNDGFNIGSGLLAKFIKTLYFPFSILYFVGFFFDLILFNLIEFG 106
4 -4.330PB044572 Q8A533_BACTN/1-343 PB044572; Pfam-B_44572;  ali follow..  13  159......................................................................THASYFMIIFALFVGVYLRKQLQLVYNDIDSVYFLCLLMAFSATVYLSPFKVPFILSVFLLSIWLFLIVALAVLDDLFRQLTPAAAVF---YLLGLMSSCIFCYFFFILMTHIYIG 298
5 -4.270HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;  ali follow..  10  13LNNSSSLTKKNMTMEENTVHPARKLLLGQLIAYLLQAVAVVVGFESDLLEVGACAEDVFVKYQMLMLMEVLTICFIPMALKMFSLSAVRRRRVRGLVLFGSCRLAMIGVPLVANTILYYMSMS--VAYGYMAIIGGLCFTFVYPSIGR...................................... 162
6 -4.240PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;  ali follow..  6  1MATQAIDATIFASSHPDIAKRTSISGLLISCVMLLIGILSFASTFELEDKSSTVS--------------MALMVFGTGLFLLGIFRLFWKSKEVVYVPTG...................................................................................... 86
7 -3.860PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;  ali follow..  7  4..................................................................................GIPEQLIRRLSDASR-----LVPLALLAVVAAVILIYRVAYSPSLLILVGTTVVAGIALVFWPRMGEDPLESAVTKWSILGTIVVAALVLSVAYSIPAGMAEE. 110
8 -3.740PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;  ali follow..  9  21.......................................................MRRQYEIMGYRLPRAVTWRALGYFAAVEAGLVAFRFLPPFKWIFGDMLMYYGVIPLFLVWGADKYKTDGKSLFSFV---WITFRLRKHQSSRLVNVPKLKKHVFYGHV....................... 132
9 -3.720HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;  ali follow..  11  41........................................................................................GERQKRTHRLCNLGGTIESLAPEFKDLTRTEMTELMEYIFSLPEVQRAVRHMAGKEQKADGNIPLHRH.............................. 117
10 -3.450PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;  ali follow..  12  1.......................................................................................MKRKVKSIRKTMWGVYLVERLKGYLDGLPPETCRRIVLGMLAAFAVLALYTFGRAAYDIGRND--GHAGRV............................ 84
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.