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Query: [M] COG5434 Endopolygalacturonase, from COG1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MILSHRYTLIALAAAILSSGAHAAGASVTASWGNVAEPSLPADSAVCKTLAATITPVSGSIDTVDGNPSNSQPDASRIQTAIDNCPAGQAVRLVKGSAGESGFLSGSLKLKSGVTLWIDTGVTLFASRNPADFDNGVGTCGTATTSNTKSCNALIVARDTVGSGIVGDGIIDGRGGSLVTSGPNANRLTWWDIAYLNKTKGLNQQNPRLVQLYNGSAFTLYRVTVQNSPNFHIVTTGTAGVTAWGIKIVTPSLAYTVPGYKCAAGTTPDKVTPATCFTPETVKNTDGFDPGQSTNVVLANSYISTGDDHVAIKASGGATRNLLFAHNHFYYGHGLSIGSETDGGVSNMQVTDLAMDGNDSSGGNGLRIKSDISRGGKVNNIVYNGICMRNVKEPLVFDPFYSTAKGSLYPNFTNIVVKNFHDLGSAKGIARTMTFLGYEAKKRTNPLTLTLDNVVFDGTQPAFDVAHNGGPASPNGTHFTFGGNGPVSFANAIVTSSTTDVTVTGTPGTAAAVDCSNAFVPLKSVAPTSPILast
1 -5.950PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  11  1MKIERLFIYCLLAGTSLLASCNSEDMTDNPVETLSEGMYPLTFTAMQGEVVATPQTRVSDYDDTDGKHKSKWDGGEVIGVKIGTDGAVGSYTLDSDGKPTTSTSNIPAYWQSTASQTVTADISLTGQDNTGNKFPYVLKGVSSKQYSYKENVQLNLEHQLVKFRVKEYGTVIPQGDK---------------ATRKVGDYYTAMLAPDTKTSNNFVKIEVYGLTYYYNPDIELVKGTVYTYTVNPYEIIDNNGNSVSGFENISKDISISGTHIPGLTITGTSNDSAGILVRKNASVIIKGNTTTASDSKLTVKASNTECNKIDIEDITLAAAIGTNVKWYTNTKCNSITIKNSVITACAAAIGTGVGYGGNGQTGPTIGSIVIENSTIY.............................................................................................................................................. 471
2 -3.530PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;  ali follow..  11  20LAARLFPAMFALLMLVIAGTGSAAAQPSPWTARPFGDRLVGWDTYRRLDLLPYLSAQSLQLSSFDRSGGDFDISTGNKNGTGGCLAPGGAGCVIAEDHGAGEELDGQTVLDTPVQMPYRRSMRISVESHLEYYHVDYRQFPTAEGVSTFSPAELPGGAEQTIAESTGPASIDGRGEFFGAGLGPTPVRSLMFAAFPQPDGSMALWCWWPMPFARSARVSLANTGAGPVFGIAAEVTTTPDARWAGALASGRAGYFTARSHAGPTILGQDWPFADE--------QGRGKFVGVSQTIR-NAPYFLEGAERVYTDGAASPQWYGTGTEDLYEGGWYFKDGTHFSDPLNGQPDQRTATAGCADYCVAVYRIM-------PAEAIGYHSALRFGIEH--STAFLYTQPDAELTGT........................................................................................................................ 550
3 -2.980PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  11  187.......................................................................................................................................................................................................................KEIKFKKINFFSSIFLSF-------ISIFALTIT---------AYNSTFLNLAQIVRINTI-RPNPNPNPNEIFNFDLNNLPIENGLLTV--EAI-LQSKMELTDTATV----------IIINNTAYVNINKNSVKHNNFAVNYLKSEENNWYLTGRD-GLFVEKFFKDDVEVFSPKIPAL----YFVVNNSTKNIFSSVGISSLSTNN........................................................................................................... 367
4 -2.680HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;  ali follow..  12  51.................................................................................................................................................................................................................................................................................................VSGLIQAQAAAGRSRAAADLAAL-GGATALSSIVAPGDPCEAASRVARAN-------GAEVTTCSVTGEDVVVEVSVEARVSSARAGPVD........................................................................................................................................................ 140
5 -2.300PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]  ali follow..  1MKIKFLSFIASFFMVSFVITSCLDDDNNIEYSPDATIHAFALDTAGLGSYKFTIDQLSREIYNEDSLPVHA--DTIIDKILIKTLTTASGVVTMKDKSGNDSVININIDLREPLTIKVTEALAGISPNQTKEYTNVHQHDPDSLRWNHVGKMQDEIIGEQKTIEFNNKILTYSVVEGKNLKVYQNSNYSNWTAAGTNTTGDLTSTLPNSILPLNGIILATANNKVYEST---------DGVAWTISDKFSGNVKTFISKIPVDTDTKITYIEDGKQYIYSILESELGAADSEKKIEEADKEFPVDNISYTTFSKGSSYYRNIIV-------------GKHEPAIEID--INNKKVPITIAWGYDGNVWAKLGTKSTTAYCPAFDNPTVIYYNELFYVESIYVSQNEGIA.......................................................................................................................... 397
6 -2.230PB155142 _HOMD.0127537_ bfor_c_1_1790 Tannerella forsythia ATCC 43037 [677748 - 680894] ORF  ali follow..  6.........................................................................................................................................................................................................................................................................................ASVLNLINPEDIESQTILK------DAAATALYGSRGANGVVLITTKSGRRGKTHIAFTAEYGTSDFATPH................................................................................................................................................................................... 70
7 -2.130PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;  ali follow..  1MKTLTFKYLKLFLLAVAMINLTSCEIEIDDFYDD-------------DNIGGSYYNKSLDLCSRPWADTFYDADGNYCYQELNFYLDRHGEDYIRVEYPNGRYSESVYSFTWNWEDRSQYSLRMVYGPGDVSY--------------------------LDDVWIRGNGYLDGH..................................................................................................................................................................................................................................................................................................................................................................... 138
8 -2.090HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;  ali follow..  19........................................................................................................................................................................................................................................SIVSSCSEEED----CSMNARPMMQCYLYKIDGETERVVNDTLDSLTITAFGTDSIILNNQKRVHGLSLPLRYTADSTVLKDVKIKKDTIVIRQKNTPYFLSMDCGYQMKQSITGRSLDSIYIQTAEVSIYGTENLK-----------LFYRN.................................................................................................................................................. 166
9 -2.070PB017610 Q11T14_CYTH3/22-188 PB017610; Pfam-B_17610;  ali follow..  10  1...........................................................................................................................................................................................................................MNRLGKIVFGLGIAVCLFSATNSIAQVKTHSSLRAENLEVILVKDIQHISDTTHHTHAHDPHKSSYKILHVN----MLVSSDPSVTGYKSVMMR----DPHGVDIYDPAAGGGLFNLNGKETPYTFK----VSTKLDGQPLKIDFLYNHPKHFRHGLHIIELYVDGLKIGEEHFVI........................................................................................................................................ 167
10 -2.070PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  28....................................................NIITKEISVDNYSEIELGGNIEYSGNNFWGNRSNKKFPVFKYTHGRSASLKITIDENLFPLLSIKSNNGRLAIRIQD-------------GTRIKPTQYVIEGSSKTLKYLKTSGPMDFSGSSDVKFPHNVKLRLGE--------------------FSVSGSGDLVFADLDCKNL---TSKVSGSGDITLK............................................................................................................................................................................................................................................................................................... 198

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 6 4 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.