current user: public
If you have questions about the server, please let us know.

Query: [S] COG5505 Predicted integral membrane protein, from COG1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .
# Score Template Links and tools%idFirst MHSLISSDDVWVLWGFIAVWAAVSIGLEQRFKWASAVSGAIIALAGAMVFTNVGVLPVESPVYDTVWSYVVPLAIPLLLFQINVRQIFKESRRLLFIFLISSVGTVLGSILAFFLLKQHIPYLDKIGGMISASYIGGGVNFAAMAAKFETPGEYVSATVVADNFMMALLFFILISIPALKWFQRHYAMPFEEKVKADGNSGNSAESYWKRKDISLKDIAFNAGAAFALVAVSMKVSGYFKSIFSHPLLTGTLGDQYLVLTSLTVLIIFLFPRFFERLNGSQELGTFLIYLFFVVIGIPADLRLIVTNAPLILLFVFIIAISNLAVSLAAGKLFRVRLEEILLAVNATVGGPTTAAAMAIAKGWRELVAPIMLVGTLGYLIGNYVGTFMGNWFSSFLLast
1 -3.630PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  9  1...........................................................................................................................................................................................................................................................................................................................ASYISVPRDLTKVKSKVMNLTKRQLICFGMAVLIGVPSFFLMKTVMKTNTAVMGMMVIMMPFFFLAMY-GQPLEVILEHMI 84
2 -3.160PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;  ali follow..  12  40...............................ALGYFAAVEAGLVAFRFLPPFKWIFGDMIDQVWLMYYGVIPLFLVWGADKYKTD------GKSLFSFVRSWITFRL................................................................................................................................................................................................................................................................................................. 109
3 -2.580PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  17  8...............................................................................PEAHFKRYIKEHVKGKKTGLFITLGADPAGEHGESMLKVGRELLNEGGNEILAEFI-GAIDPKVIEEMKEMAAK................................................................................................................................................................................................................................................... 82
4 -2.550PB078508 A6TV41_9CLOT/1-155 PB078508; Pfam-B_78508;  ali follow..  8  15...............................................................................YKEMLARTNQTDVYYKAFFYCMGICETTRKHIEDLF--DFKEGGIMPEHLHQPYQTGTSYKVTRMAYNLEGTESLTTPSSLFACEYAAEFHQAIKIRFSEYYRERDFEKSSLRKQIKDLTEKNVIESTNAKEHSEIE.................................................................................................................................................................................... 155
5 -2.290PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]  ali follow..  9  2.................................................ADEFGYLFLDRPPYQVLASSAITYE--------EMLRLHAIEGLLKYYGNSHLADHAFAYLAATAFDGSYFAIYEALAAWWEAR--GLLRRGHSQRDLFNHLASFAIHLARGIATRVTVPPLPGYHDSILEINSHGDTPASGAEHSGCARNLTPAQLDRFYQ---------LLKFDCLCRDRSRNFPGWMPPSPLTEEERSNWMARITTPRSMEKYMPGLVKESPANLRRHGFIELF-----------PCHPERPEEDNPTIVFF.................................................................................. 236
6 -1.550PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;  ali follow..  12  30................................................LKGYLDGLPPETCRRIVLGMLAAFAVLALYTFGRAAYDIGRNDGSRMETGHAGRVEL................................................................................................................................................................................................................................................................................................... 86
7 -1.540PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;  ali follow..  12  16..................................................................................................................................................................................................................................................................................PDIAKRTSISGLLISCVMLLIGILSFASTFELEDKSSTVSMALMVFGTGLFLLGIFRLFWKSKEVVYVPTGSIA................................................ 89
8 -1.540PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  11  67......................................................VWPYAKLASERLSE--LNARLASIKSKSERRKYTKIVQKYIEE--LKKLTRTEGQILVKLIHRQTGVTTFQLIKNLRSGWRAFWYDTTAGLFDIELKSEYNPVNNREDFLIEDI.................................................................................................................................................................................................................................... 181
9 -1.430PB021443 Q5LG43_BACFN/1-226 PB021443; Pfam-B_21443;  ali follow..  8  1MKTMK-----FILACVLLLSPLLCQAQKNLFNKYNDMKGVSSVYISKAMMELNPNLFMKDLYIGKVAEHLNSVQVLSTHDNKVREEMAKDIRSLVQSSKYELLMKQKSTVSGSEVYVNRKGSKVKELIMVMNG-MEGDMTTDDIKKLML....................................................................................................................................................................................................................................................... 151
10 -1.380PB019827 gi|67919427|ref|ZP_00513005.1| conserved hypothetical protein [Chlorobium limicola DSM 245]gi|67782966|gb|EAM42367.1| conserved hypothetical protein [Chlorobium limicola DSM 245]  ali follow..  8  1....................................................................................................GSVSWIAGAEYQLLAVRDYAEGYYSPFAGAFAERGDGGSNERGVYLGIDAASSKVSVGAYYDWFYPSSGYDTRFFLDWKQSRAVTWTLQLQHKEKEVALKQCPDGAGSCDEEEELYAPLGKVTDRVRL-DCDIDALRKLTLRTRGEVKRVVKEYLAGDESCYGWLVYQQAGYKAGKFGLKGRFTIF-IYVYEDDLPLVFNSTGFNGRGKAFFILGTWDVTKNLKLAGKFETTWYDDREVYGDSTDQRNTSAPGTFHFG...................................... 283
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Dunbrack RL Jr, Dunker K, Godzik A. Protein structure prediction in biology and medicine. Pac Symp Biocomput. 2000;(12):93-4.