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Query: [S] COG5650 Predicted integral membrane protein, from COG1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDQKLDQQKVDRVSPGDSEPVARDFINAIGGRFGRFAQVGTQRFWTPLRVLITTSLVFLAMGFLTKANCIQGSRGTDGVVSLNWSGSRQYTSACYNDIVPLYGGRGIDAPGFPYAFSWQEGDLTRYMEYPVLGGIFQWICGIITRFLYPVVDVIPFHTLPESGLYFIVTALALAFFWVLVIRMMVELTGNRVWDTVLVAASPLVAVHAFTNWDTPAIAAVIGAMLAVKRGNPLVAGVLIGAGTAFKLWPLYLLGAYLVLAVKNKNLKPFITMAAAAAVTWLVVNVPVMIAYPKAWNEFLRLNRERGAEWTTIYQVIDRNLPINLNDPVLLNVLSFGLFGASCVAILILGLKVQRTPRVAELAFLIVAAFLLFNKVWSPQYSLWLVPLAVLAFPQWKVLFPWMVTDAMVWPILMWHMLGTDNKGLPHEMLDLIVISRDAFIVVMIVGVIRQMLGRRADPVMDAHAGRDLLAGPFGAGERRKALKEVSLast
1 -3.920PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  13  3..............................APDGSFPPVGRSIAYRGVAPAQVRGALTAVIRRTLGAPGTDTGNDGAGWLRIGLAGHQPGLGEVYISTGSLYLC.............................................................................................................................................................................................................................................................................................................................................................................................. 97
2 -3.610PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF  ali follow..  15  52.....................................................................................................................................................................................LTIRRLRKIMVLADIGFILAGLFMVEDSYGFVKQYLANSIGGYTTYVNIFYHNWVVILLIATALEVYTLHRID........................................................................................................................................................................................................................................ 124
3 -3.430PB028090 gi|167758043|ref|ZP_02430170.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]gi|167663940|gb|EDS08070.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]  ali follow..  10  1..........................................................................................................................................................MLFQIYGENAGWQLLGWLLVFAGLILANELARRTKVGGIFCFLIVPAALTVY-----FIAIYVGAANGAEWALNNPTYVHMNSWFHYA---KLYAAT-AGCIGFMMLKYKWKIGKTNWFKVFPFVIVAINIL------IAVVSDFESGVRGAMALAEYGDRWWLSSENVWLYGGWWNWVNGIAGILNILCMTGWWGIYSSKDKKDMLWPDMTWCFIIA-------YDLWNFEYTYNNLPTHAWYCGLALLLAPTFANAL......................................................................... 237
4 -3.250PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  7  81.ECVQNTTDKTVNQQAGDIYNYERPSQLTQWPVQIKLAPVNAPYFDGAKLLIA-------------ADCTAYAYAS---FHEKFIKGHVTLIGC-PKLDSVDYSEKLTE----IRRNDIQSVTIVRMEVPCCGGLEMAAKKALQDSGKFIPWQVATISIDGRIL.................................................................................................................................................................................................................................................................................................................................. 223
5 -3.220PB030138 Q7MX14_PORGI/1-113 PB030138; Pfam-B_30138;  ali follow..  18  36IRREVEQEEQAELDGQSSSHDYSGYRPRIRGTFVEQGETQSTRSGRTLRTLALLIAVCLLSWLVFK.................................................................................................................................................................................................................................................................................................................................................................................................................................... 111
6 -3.030PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]  ali follow..  10  126.................................................................................................................................................................................................AILVSTGIPLFAFRGLSETGLVPFNLALAVDLPLVA---LGVIMLLTRSRLFTNVKHLVDLEFWAARLRLEHEDRRMRRLAIAVGLWICAALPLAVVQ--------------ALPPIGVGMGVPAGADNGTLNGGDLSELALALSVVLVALGLWIFLPANWAVQTQQTLICVIVAYFVWGAVFNQWDKSWVLPISGLL............................................................................................... 349
7 -2.690PB012823 Q5LCS8_BACFN/1-272 PB012823; Pfam-B_12823;  ali follow..  8  3................................................KIKQMIKYIATLLLTVLFVACNNGKGQQPSEENEDWLDDET--TIYYSDVYFKILKDTL........................................................................................................................................................................................................................................................................................................................................................................................... 84
8 -2.600HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;  ali follow..  9  84.MIHHDEVYAISRDATPAPKKVSNVKDCSASDVTLQLSAASQSVPVGGSLDFTATIVH-----EGSGNYLVDGSDSGRVLTI-YKSDV-----CPADSRLLLMAKG............................................................................................................................................................................................................................................................................................................................................................................................ 184
9 -2.560PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;  ali follow..  10  5........................................................................................................................................................................................................IPEQLIRRLSDASRLVPLALLAVVAAVI--RPLFHGLIYRVAYSPSLLILVGTTVVAGIALLESAVTKWSILGTIVVAALVLSVAYSIPAGMAEERSLAQDATADAEAVTDF----------------------------------------TVNEENPRIVPEAVANVQTKGSVSYRQHELWSYPI................................................................................................... 177
10 -2.530PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;  ali follow..  11  4.............................................LTFKYLKLFLLAVAMINL---TSCEIEIDDFYDDDNIGGSYYNKSLDLCFYDADGNYCYQELN.......................................................................................................................................................................................................................................................................................................................................................................................... 70
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;