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Query: [C] KOG1257 NADP+-dependent malic enzyme, from COG1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLSRLRVVSTTCTLACRHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIYIMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKMAFRYPEPEDKAKYVKERTWRSEYDSLLPDVYEWPESASSPPVITELast
1 -2.500HGC00672 gi|162843654|dbj|BABA01001055.1|4.0 TMP00845;  ali follow..  12  5............................................................................................................................................................................................................LNTNKQFMVGN-VYMSMRLQQFAGDSTSIFINDSLLVNRTMTEEPFILEVKRFAEQSALMIVNNATEKLSLFELSEQGGEYRF-----------EKEGEEVKPTGAGIKKLSKECCQTLSTFIL................................................................................................................................................................................................................................................................ 149
2 -2.380PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;  ali follow..  12  108...........................................................................................................................................................................................................................................................IMFEDTQNGD--------------YNDLIIHVKNTASNHAYQHPTETWQTI-EIQPIALGSTTIKLGC-----ILSDGSTHMISDDVRTDLFGGRQGFINTVNDNDPIRYKLASTNIKNYAMPKKEKTSAAWVAWFIEVDGKRMYAASSDIDYKSYDMVNKENMPYGLAVSNGNGTFSPQEKNSLFETYPGFSDWINGKVSSIGSFQKELVYKYCSGGII................................................................................................................. 311
3 -2.170PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;  ali follow..  12  2................................................................................................................................................................................................................................................................................................................................................................................................................SETKERLCIYADFPYEFAVCAPRTDC-PKREQCLRASAYDGVLARGLQKITVINPL----IPTSEQGCKAFADNTPVLFAHGITHLYDELPHHAVQSLKHRLLT-YFGKTTYYRIYRKERYITIQEQDYIRDSFVRAGFSS---DLIRYDAMVYMYELQS........................ 152
4 -2.120HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  12  13.....................................................................................................................................................................VIAFL----AGAGVSAGVFAFVLVIG------VVPRILRCSRIENIILIENVMI--------GVVAGNISSVLDTAYNLGFANMPKVPVSNICGNIIIAI-------YGLCVGIFVGCIAVALAEILHTFPIIYKRMKLRAVISMAIGKALGALYYFLTGFVATS.............................................................................................................................................................................................................................................................. 158
5 -2.110PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  12  173...................................................................................NLPNLWGEKFTFTFKEIKFKKINFFSSIFLSFISIFALTITFAY---NSTFLNLAQIVRINTIRPNPNPNPNEIFNFDLNNLPIENGLLTVEAIWFLQSKMEL------------------TDTATVIIINNTAYVNINKNSVK---HNNFAVNYLKSEENNW----------YLTGRDFPLLGLFVEKF--FKDDVE-----VFSPKIPALYFVVNNSTKNIFSSVGISSLSTNNPKLIFTFTFDNGFS........................................................................................................................................................................................................................................................... 381
6 -1.860PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  16  12.......................................................................................................................................................................................................................................................................................................................................FKRYIKEHVKGKKTGLFITLGADPAGE--------------HGESMLKVGRELLNE-GGNEILAEFICQGAIDPKVIEEMKEMAAK----ASTHPDENDLKNARKAFE..................................................................................................................................................... 119
7 -1.850PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;  ali follow..  16  3...........................................................................................................................................................................................................................GHEEVRTGWSRWDSL------------WPFLLFYCNFLKGVFLLRIA-------------VDGQGGGIGKHITARLRQE----PEVEILALGTNAAATV---AMIKAGANEGATGERA------------------------------------IYNAPRVEAITGSLAIILADAMLGELTPAMAAAIAASPARKFLLPINRSGVEVIGVTPEPLPHLIEALV.............................................................................................................................................. 161
8 -1.830PB008694 Q9F6U1_BACTN/1-190 PB008694; Pfam-B_8694;  ali follow..  14  15...............................PRKRRKWRFTVWRRS-----------AATSKPPSGNLPKSGETRKQPTIKNEFINEKRKMRMNLPKVKMLQVSKCLIGLAVMMLQS--CDVADNLRDMLCGNWESVEGKPDVL-------YKEGEAYKVTVFRRSGLRRKLKPETYLLQEENGNLFMNTGF-----RIDVSYNEATDVLTFSPNGDYVRVKPQPENQTE.................................................................................................................................................................................................................................................................................................................................................................. 190
9 -1.730PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;  ali follow..  11  145....................................................................LRMLKKLGQDLRNPKNIEDFMAAHDNATRKIEAIHEKERAAEQRRWEIERREREQQRQLQRKKDAEDFIANKSKFFG--LVITDEEIIVKVLESIDEYYNEGKVFGSG--YKKADTLILS----ARIGDEIIETVEVDLRTLEVVQ-----GKHNQDTEHERIIDLVNKNANLIRER................................................................................................................................................................................................................................................................................................................................................... 319
10 -1.510PB155142 _HOMD.0127537_ bfor_c_1_1790 Tannerella forsythia ATCC 43037 [677748 - 680894] ORF  ali follow..  17  14......................................................................................................................................................PEDIESQTILKDAAATALYGSRGANGVVLITTK----------------------GRRGKTHIAFTAEYGTSDDYMDAGQYAQYTWESLK........................................................................................................................................................................................................................................................................................................................................................ 89
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 5 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35