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Query: [A] KOG1295 Nonsense-mediated decay protein Upf3, from COG1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSSKDIGEVVQFRDRFDGYVFVDHKGVEYMAIVEYAPFQCFLKNKARNDDSKVNTIESEPHYQEFIKRLAQEREEASRMGDVKIDFNFERRTEEKVKSTPLLQYLANKKEKRREEARRRNEEKRKQREEQKLLRLAAQSDASKLKEAEGGGGGGDTKKPAKKDVKDPQSSGSQANDAKASRSKRRTERDQRRREEHEQRKLVKRDKKKDDGQGKQDKQDKQDKGKPSSGKQNKNSKSMDIVILKKANKPESNESLDVPSTSNAAEASKEKPATENTETPEAAVKVFTPAARGGRKEKRTGADKQPAGSAHETAEEAIKAAQFRASEERRIRNKVGLTYYPPRHFTNPLDVYRIDHRLPFTSPKPEFVHQMSCPKVQAAKMARMERLPWWRRRLRRGTNAPIGATNPNRRRLast
1 -3.130PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;  ali follow..  13  55.....................................................GKEPKDSDIWNFISSHADSIPQPKKMNPKRMQRVLNKSKKQSAVSTKAQAEMQKLHEALKKEKKSQSKEKRQALKQYKYQLKQEKRHQKRQ.......................................................................................................................................................................................................................................................................... 161
2 -3.060PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF  ali follow..  5  19........AFFIIQDVACIVM--LIGAICFATMQMRQ-TNLTIRRLRKIMVLADIGFILAGLFMVEDSYGFVKQYLANSIGGYTTYVNIFYHN--LLIATALEVYTLHRIDYLIEKE..................................................................................................................................................................................................................................................................................................... 130
3 -2.930PB012108 A3U600_9FLAO/1-189 PB012108; Pfam-B_12108;  ali follow..  13  92...........................AFTPLKEYIPLKLKATELTYKTDSLETALAINNQYYESIKKVLSGDVKSTDIDKDSILEAARISIDSINLSPSEEDLKLREKVALEDK....................................................................................................................................................................................................................................................................................................... 185
4 -2.860PB067216 JCVI_PEP_1096676511767 /source_dna_id=JCVI_ORF_1096676511766 /offset=0 /translation_table=11 /length=256 /full_length=256  ali follow..  15  62...........................AFTSLREYIPLRRQAVSLAEATDSLSQIISYNERYIERIRMVLKGDYAPSQIENDSLDLPFNLDTTTIALTPIREDSILRARVALEDR....................................................................................................................................................................................................................................................................................................... 155
5 -2.590HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  13  84VSNICGNIIIAIYGLCVG-IFV---GCIAVALAEILHTFPIIYKRMKLRAGLGIIV.................................................................................................................................................................................................................................................................................................................................................................. 135
6 -2.530PB038401 Q8RFH0_FUSNN/1-210 PB038401; Pfam-B_38401;  ali follow..  23  160....TDYHLPIFQSGFDGYLAYDKDGNVCQLIVELIDIELAYSEIDEEDE........................................................................................................................................................................................................................................................................................................................................................................ 210
7 -2.420PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  6  89.................................................................................................QRPKIRPYVTDNYYAALLRQAKAEKEVEEIVRLSQKEKSGEKNIHNAGGVKQSRPDGSKGNRKKR........................................................................................................................................................................................................................................................ 153
8 -2.220PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;  ali follow..  12  88............................................DKYKTDGKS-------SWITFRLRKHQSSRLVNVPKLKKHVFYGHVCVQHDVKDLPIVHSFSEEENDIHAYDVTFLPQKEEVEYVEKDEQTTIKA............................................................................................................................................................................................................................................................................... 181
9 -2.040HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  16  1MDMTDNNDDVLVKKFFSEN--VPDDGFSRRVM------RRLPDRTRR........................................................................................................................................................................................................................................................................................................................................................................... 42
10 -1.990PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;  ali follow..  15  25...GHSKTVYAF-----AASFTDT-------VVYFTDIQILDSAKVSKEGFLTHRDLYSYQLKNYVED-----------------------NGLQQNSTCMIYFSENRKKLEKEATKILSKYKRNRN........................................................................................................................................................................................................................................................................................... 115
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 2 6 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.