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Query: [K] KOG2181 LIM domain binding protein LDB1/NLI/CLIM, from COG1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MCVVIFLKFLFSDNGNNQHGTEAAFGRLAQSYRIQDLLFIIVIFFRAIHIMMFHRPPSARPPLNHVDQLKSLQATALGKPGMRSQATEPQPIGNTVSPLEFRIHDMNRRLYIFSSTGVSENDQQQWWDAFSHEFFDDDCKLWFVIGSEPVAFASRERYIINRQFIPKFFRSIFDSGMRELQYVLRGPSRECTLANGSQAYENENVLQITRYDQSSQFEVNTEGKLYVEFAPFDEVMNYRIKAWTLELKRSNEFVYNQNTADYRVEAQNPEQENKPRMGFFKSTFNLMTMLKILDPMQSIMSSAKSAPAITPREVMKRTLFQHHQVRQQNMRQQQLNQQMMIPAPEPEKPKPARKRQRKPAANPRGSKKATAAAAAAAAAATNGVPPTVPTASPANNQQFPPNPMTSQFQQMSYPDVMVVGEPSMMGSEFGENDERTISRVENSQYDPNAMQMQSLGQGPNSSMNINGRNMMNQHHPGMQPPPGQQHMPPHSMGSQMPTSMHNPMHMPPGSMQGHGGMPPMPSTMANQMPPPNLPPHTMSNQMPNSRMPPMQGQMPPSGMPGQMSNPNMMGSGMPPMSMSSQMPGSMSNPMPNQMPGGMQMNQMPPPNYSQYTGGPPPQWPPPNSAMITGLast
1 -7.150PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  18  200....IFLSFIFAYN--------STFLNLAQIVRINTLLTVEAIWF----------------------------------------------------QSKMELTDTATVIIINNTAYVNINKNSVKHNNFAVNYLKSE---------ENNWYLTGRDFPLLGLFVEKFFKEVFSPKIPALYFVVNNSTKNIFSSVGISSLSTNNPKLIFTFTFDNGFS........................................................................................................................................................................................................................................................................................................................................................................................................................... 381
2 -4.560PB078508 A6TV41_9CLOT/1-155 PB078508; Pfam-B_78508;  ali follow..  9  1METIKFN--------SEAH--ELFYKEMLARTNQTDVYYKAFFY----------------------------------------------------------CMGICETTRKHIEDLFDFKEGGIMPEHLHQPYQTGTSRMAYNLWNGYVEEGTESLTTPSSLFACEYAAEFHQAKIRFSEYYRERDFEKSSLRKQIKDLTEKNVIESTNAKEHSEIE........................................................................................................................................................................................................................................................................................................................................................................................................................... 155
3 -4.550PB032818 Q5LA03_BACFN/1-211 PB032818; Pfam-B_32818;  ali follow..  12  3.....IFANLF---KKQADADAKVVG------NVEDFVSLTRVYFQSVIAVNLGTNIRFLPDVANFKRL-------------------------------FKVATQGGKLGLAEKSASRKMLMQDY--GISESFFKE---IDTSIKKNCRTQNDVQAYLF-----------MYQGFSSDLMMLMGNLMQWKFRMPAIF------KKALRSMTEKTVHDVCTKTKTAAAVRQYKERLGFS-EQW------MSEYVYNIVLLAKKEPKHKDEEAK.................................................................................................................................................................................................................................................................................................................................................................... 210
4 -4.470PB002776 gi|157737147|ref|YP_001489830.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]gi|157699001|gb|ABV67161.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]  ali follow..  6  179AS--------FLKESYNS----SVWGHYGQGHS-------VCLIFETLKEVNYNGNFEEINFFESLGKIPQPLVESFYIDENKNKSILFDKVLNNQEEWRKLFWDKYEKNKLTKTKD---------WT------YEKEYRIVLNRLMDYEIKEEDRKLKYDFNCL------------KGVIFGIKTPQNK----------------------KDEIIEIIIN-DFEF-YQAFYCKESKNIQHKKLDVNIINDLIKKA.................................................................................................................................................................................................................................................................................................................................................................................... 390
5 -3.750PB012108 A3U600_9FLAO/1-189 PB012108; Pfam-B_12108;  ali follow..  8  1....................................MLSLLLIEYNSI-------------------------------------------------TKRFLSGNIENSIFVNQQNAMAKKEKKQLKKRLLHKYFEERVSLKLTSLLLIAGTTVLIAFTPLKEYIPGYSSTSLKLKATELTYKTDSLETALAINNQYYVLSGDVKSTDIDKDSILEAARISIDSINLSPSEEDLKLREKVAL................................................................................................................................................................................................................................................................................................................................................................................................... 182
6 -3.440HGC01215 gi|162843249|dbj|BABA01001460.1|3.0 TMP01713;  ali follow..  10  5FCVEGFSVDVF-------H--------------IREICFPVLFFCHFSVSDTFANKAASGGNVVSENTIAVHEQTDAYIAMPQLPYLPDAELAGMGGQLHSLTYSRIQRISTTEYIFSLKDATAYYRCQPVCEYY----------------------FTLRRILI................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 150
7 -3.420PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  8  40..VIILNKIKFTSDLERRR-----YLILRRK--------TRKVW-------------------------------------------------PYAKLASERLSELNARLASIKSKSERRKYTKIVQKYIEEQFAAEEGQILVKLIHRQT---GVTTFQLIKNLRSGWRAFWYDTTAGLFDIELKSEYNPVNNREDFLI-------------EDILQRSFQRNILDNQPSVLNIDYFEASSKW.................................................................................................................................................................................................................................................................................................................................................................................................. 209
8 -3.320PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;  ali follow..  10  62..LLMVIPM---D-------AETPGGRLPQAQVMEEAI-TVLSVRLDLDAARGKLGPEACEMERQRFDGVIAMMERNDGPTLHPWTLDRSSGRPLVPITTFSIQQNGGRLDPFVEGLEA-----------LETLQDGDRVLISEACNHNRITSACN--DIGMVQIPNKLEAALGGKKLQIEHAFGRELESGGMDGLKLAIHCGGCMIDAQKMQQRMKDLVTNYGVFFSWAAWPDALRRALEPWGVEPPVGTPATPAAAPATAAS............................................................................................................................................................................................................................................................................................................................................................................. 329
9 -3.270PB008806 Q5L9W8_BACFN/1-127 PB008806; Pfam-B_8806;  ali follow..  11  19........................................................................................................LQTATMIIGTPLSIAES---YVHKNMGEILQQTMSITQI---RIKPTDKNKLFLNINHINVSDWFKEQLNKLNQSVRMKQRQKIVRVQSSNDSILLDFSK-------------KVKFNAALNLAFCIF............................................................................................................................................................................................................................................................................................................................................................................................................. 127
10 -3.140PB015954 Q6WBB3_BIFBR/1-225 PB015954; Pfam-B_15954;  ali follow..  8  6..IELW------------HGSSHVIKHYGMGKPNND--Y----FYCTRSIELAKE------------------------------------ACAGLDDGFANRYTLTTDGLTFLDLSQPPYTILN-WLALLVEN-TTAVAAQGIEYLRQVFLPDISQADV--SFARTFVNNAISLDQLADAMRLGELGKQ-------IVLISSRAFAALQF---QDCEIARASTYHVLRNERDVTAREAYRRKSAEADIDGLFIIREKVTNDDPR............................................................................................................................................................................................................................................................................................................................................................................ 225
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;