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Query: [A] KOG2242 Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain, from COG1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDVRRLKVNELREELQRRGLDTRGLKTELAERLQAALEAEEPDDERELDADDEPGRPGHINEEVETEGGSELEGTAQPPPPGLQPHAEPGGYSGPDGHYAMDNITRQNQFYDTQVIKQENESGYERRPLEMEQQQAYRPEMKTEMKQGAPTSFLPPEASQLKPDRQQFQSRKRPYEENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKKSTNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYPHVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGTVGPKSKAECEILMMVGLPAAGKTTWAIKHAASNPSKKYNILGTNAIMDKMRVMGLRRQRNYAGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTLast
1 -7.780PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  9  1MNTETLETTQLRTVVEERALHLKGLKAHTQDRLFDFITSEIFNQTAISAQIKAQEDHLRNMPVHEFVDVSSEMEAEELQKANRVLDPEFFVRKEASEETQPEEQLQLGKPLDFNKAETHSFSEWLKLTAFNKIDRSKEVKETISASASDKTEASSENTIIEETASETPLELETTIPSIEVDQDPERARRLELIDKFIESNPKIKVSTPDSNFKKPN-------LEDRFQPSDSLMTETLARVY--------VEQKNFSKAKQAYRILSLKYPEKS........................................................................................................................................................................................................................................ 297
2 -4.900PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]  ali follow..  3  90IKITDENIKSFDRVARKYGID-KAKDVDVMTAAFREYAGVELKKKQVKKPSVRKKLQKSVERKAKHRQRVKQRQKSRGQE........................................................................................................................................................................................................................................................................................................................................................................................................................................... 186
3 -4.480PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]  ali follow..  13  1MDTIDNFLDAMFAPYPAST-RLTDAKVELRAMMEDAYADAIASGMTHNEAVGRVITDFGNLQEIAPVLGIADDLTAAEKAPQPEAAPAPAGTEGVGAPSRPRVTLPEAQELAEARRRGA.................................................................................................................................................................................................................................................................................................................................................................................................... 118
4 -4.120PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;  ali follow..  12  96MNPKRMQ--VLNKSKKQSAVSTKAQAE-----MQKLHEALKKEKKSQSKEKRQALKQYKYQLKQEKRHQKRQ................................................................................................................................................................................................................................................................................................................................................................................................................................................... 161
5 -3.690HGC00870 gi|163286116|dbj|BABD01024572.1|2.0 TMP01154;  ali follow..  16  86.FFSDNRLNQALAALRKSGAGTFPYKAILTPQCFSEIRREHETIQKQLKGNKEQAEE.................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 149
6 -3.580HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  13  7............................................................................................................................................................................................................................................REIFLSVIAFLAGAGVSAGVFAF-LRCSRIENIILIENVMICGVVAGNISSVLDTAYNLGFANMPK-YGLCVGIFVGCIAVALAEILHTFPIIYKRMKLRAGLGIIVISMAIGKALGALY....................................................................................................................................................... 148
7 -3.370PB023339 Q8A4U7_BACTN/1-171 PB023339; Pfam-B_23339;  ali follow..  10  108.............................................................................................................................................................................................................................................................................................WNNSHRAYDDSVEKSVYELNDANMPIAYMNYKWNDYKWIEESAGNWAMNIQTPVTDEADLLLAG.............................................................................................................................................................. 171
8 -3.300PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali follow..  6  47...KSEKQDTLHSEASDEDADIIGKSRFRMAPTRTTAAISTQEAAISEKGIELSEEEATFDDGNTETASRPTQVPEDKLDETFTSISPEELEYGEDEPEDDEPGKGQASGSAFEDIDMAVRTIKKDSPSEAEMRHAGKVMTELDGTELYSRITERLTDEPMSERLAKAMAVFVDTVNTTVAQPKTKVFVVLDN.......................................................................................................................................................................................................................................................................................................................... 236
9 -3.140HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;  ali follow..  16  1MTPYKLKKLNNSSSLTKKNMTMEENTVHPARKLLLGQ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 41
10 -3.140PB067216 JCVI_PEP_1096676511767 /source_dna_id=JCVI_ORF_1096676511766 /offset=0 /translation_table=11 /length=256 /full_length=256  ali follow..  4  86....AEATDSLSQIISYNERYIERIRMVLKGDYAPSQIENDSLDLPFNLDTTTIALTPIREDSILRARVALEDR................................................................................................................................................................................................................................................................................................................................................................................................................................................. 155
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;