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Query: [R] KOG2897 DNA-binding protein YL1 and related proteins, from COG1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAASRSRRNNAGNKIAHLLNEEEEDDFYKTSYGGFQEDEEDKEYEQKDEEEDVVDSDFSIDENDEPVSDQEEAPEKKRKRGVVNTKAYKETKPAVKKETKATPALHKKRPGGGVTKRRPRPRFTVLDSGRKSIRTSTAIKTQATKIRLKELDDARKRKKKKVRVEDYMPTQEELLEEAKITEEENTKSLEKFQKMELEKKKSRPTKRTFSGPTIRYHSLTMPAMRKPTRGANPAVDSKDLAGKCERTFVTIENDFNDKVFQSLFRHKAPPKASNGICPITRLPARYFDPITQQPYYSIQAFKILREAYYMQLEQQGGGSEQPELAKWLEWRKLVKENRLKASAAASKNGDNLast
1 -5.110PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;  ali follow..  14  78.................................................................................................................................YDHIKTSSHADSIPQPKKMNPKRMQRVLNKSKKQSAVSTKAQAEMQKLHEALKKEKKSQSKEKRQALKQYKKQEKRHQKRQG............................................................................................................................................ 162
2 -4.760PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;  ali follow..  13  121...............................................................................................................................PKLKKHVFYGHVCVQHDVKDLPIVHSFSEEENDIHAYDVTFLPQKEEVEYVEKDEQTTIKA................................................................................................................................................................... 181
3 -3.790HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;  ali follow..  21  1........................................................................................................................................................................MTPYKVSHQLKKLN--NSSSLTKKNMTMEENTVHPARKL................................................................................................................................................ 37
4 -3.570PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]  ali follow..  7  19..................................................................................................................................THVQAQTSKAAXXXXXXXXXXXXXXXRLAKDAVMGEEAFNNAMQAITNRS-RVYYVNSNTNFVSLNDGQ........................................................................................................................................................ 99
5 -3.560HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  17  26............................................................................................................................................................KRKDEDDMAKSTKTYEERIRALEKKEQESIEATKKLIAQRKELEKRKKAEES............................................................................................................................................... 77
6 -3.330PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  8  73...........GQPLEVILEHMIQAIFQRPKIRPYVTDNYYAALLRQAKAEKEVEEIVRLSQKEKSGEKNIHNAGGVKQSRPDGSKGNRKKR................................................................................................................................................................................................................................................................... 153
7 -3.290HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411;  ali follow..  10  141............................................................................................................TEREMQDYELRPSRNNLDIRRQMDAQAQVVGKWEDAHHVPDQKRLTWFYPDFGSYVVKEYVTPDQLAVRVRSIERQEAARAHKEAKRQEQLKAAQREAQGHRGPELPKRS..................................................................................................................................... 254
8 -3.070HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;  ali follow..  21  3......................................................................................................................................................................KPKNLEQLRAEKEQVETQLAQEQHKLKRLENRKKYLEKGERQ............................................................................................................................................... 44
9 -3.060HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  15  9......................................................................................................................................................................MARTATEKLE--MRGQSVTVENIGKTVTDGFEKVSNNVNDFISSDKPRNFFQK.................................................................................................................................... 59
10 -2.740PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)  ali follow..  5  28.................................................................................................................................NVAGKWDGTINKAKLTKYLQLSSQQNEQQEQMKVANSSKKNSDQKVRNAVYGNLKLMKNTSDYLRLMALTLRNKGID................................................................................................................................................. 118
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.