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Query: [D] KOG4259 Putative nucleic acid-binding protein Hcc-1/proliferation associated cytokine-inducible protein, contains SAP domain, from COG1018

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPESDVTKMKVADLKRELKLRGLAVNGNKTELQDRLQTALLEGDLSLEDSAIADAIDDDDVSFTDEDEHKLLGDENDDELLKSPVSTPTTVAIPDLLAEEKTSSAPDAAAPTKKIVLKRNNSQQSTGTVASTGTTPSKENEAPAAAASDSTGETPTKKHKPIVVGPKTEGEKPSGDKKLNQLTAQERLELRAKKFGITPPAVANTATAVAVAINKSSSASITANKGNKETEEQQKEALKKRAERFGFVVPDKAPTSKADDRLQKRKERFGAGAVSAATTTPTTTESKDAWSEKARARLERFKTAPSTNLast
1 -4.540PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]  ali follow..  14  1MDTIDLDAMRLTDAKVELAYADAIASGMTHN-LQEIAPVLGIADDLTAAEKAPQPEAAPAPAGTEGVGAPSRPRVTLPEAQE.................................................................................................................................................................................................................................. 109
2 -3.670HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;  ali follow..  22  1.....MTPYKVSQLKKSLTKKNMT---MEENTVHPARKLLL........................................................................................................................................................................................................................................................................... 39
3 -3.370HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  13  1MDMTDNNDDVLVKKFFSENRIDVPDDGFSRRVMRRLPD.............................................................................................................................................................................................................................................................................. 38
4 -3.330HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  11  7.....VPMARTATEKLEMRGQSVTVENIGKTVTDGFEKVSNNVNDFISSDKPRNFFQK.......................................................................................................................................................................................................................................................... 59
5 -3.080PB155142 _HOMD.0127537_ bfor_c_1_1790 Tannerella forsythia ATCC 43037 [677748 - 680894] ORF  ali follow..  18  12INPEDIESQTI--LKD---AAATALYGSRGALIT.................................................................................................................................................................................................................................................................................. 44
6 -3.040HGC00870 gi|163286116|dbj|BABD01024572.1|2.0 TMP01154;  ali follow..  6  82FVFAFFSDNRLNQALAALRKSGAGTFPYKAILALQCFSEIRREHETIQKQLKGNKEQAEE........................................................................................................................................................................................................................................................ 149
7 -2.740PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;  ali follow..  9  106....NISNKLVPAAIVAQSSIGAKAGSKRGDLAAVM................................................................................................................................................................................................................................................................................ 137
8 -2.610PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]  ali follow..  7  87LSNIKITDENIKSFDRVARKYGID-KAKDVDVMTAAFREYAGVELKKKQVKKPSVRKKLQKSVERKAKHRQRVKQRQKSRGQE................................................................................................................................................................................................................................. 186
9 -2.550PB012472 gi|62259485|gb|AAX77857.1| unknown protein [synthetic construct]  ali follow..  14  249LRQITELTKQNNSLKKEHKKA-----SDKANLIQVNRKSIED.......................................................................................................................................................................................................................................................................... 291
10 -2.550PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  7  12FSDMKSDSPDLKTMLGRIRASDFVDLASRDAVLQRLTKA............................................................................................................................................................................................................................................................................. 63
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.