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Query: [J] COG0017 Aspartyl/asparaginyl-tRNA synthetases, from COG1018

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKTTIKQAKDHLNQDVTIGAWLTNKRSSGKIAFLQLRDGTGFMQGVVVKSEVDEEVFKLAKEIAQESSLYVTGTITEDNRSDLGYEMQVKSIEVISEAHDYPITPKNHGTEFLMDHRHLWLRSKKQHAVMKIRNEVIRATYEFFNKDGFTKVDPPILTASAPEGTSELFHTKYFDQDAFLSQSGQLYLEAAAMAHGKVFSFGPTFRAEKSKTRRHLIEFWMIEGEMAFTNHAESLEIQEQYVTHVVKSVLENCKLELKILERDTSKLEKVATPFPRISYDDAIEFLKAEGFDDIEWGEDFGAPHETAIANHYDLPVFITNYPTKIKPFYMQPNPENEETVLCADLIAPEGYGEIIGGSERVDDLELLEQRVKEHGLDEEAYSYYLDLRRYGSVPHCGFGLGLERTVAWISGVEHVRETAPFPRLLNRLYPLast
1 -7.870sp|Q8HWS3|RFX6_HUMAN DNA-binding protein RFX6 OS=Homo sapiens GN=RFX6 PE=1 SV=2  ali   14  1.............................................................................................................................................QFLNTGSFNFLSNTGAASCQGATLPPNSPNGYYGSNINYPESHRL----------------------GSMVNQHVSVISSIRSLPPYSDIHDPLNILDD.............................................................................................................................................................................................. 77
2 -6.060sp|Q8N3J3|CQ053_HUMAN Uncharacterized protein C17orf53 OS=Homo sapiens GN=C17orf53 PE=2 SV=1  ali   14  28LRKQAALKQLPRNKVPNMAVMIKSLTRSTMDASVVFKDPTGEMQGTVHRLLLE----TCQNELKPGSVLLLKQIVFSPSLRNHYLNVTPNNL.................................................................................................................................................................................................................................................................................................................................................. 116
3 -4.910sp|Q8IXR9|CL056_HUMAN Uncharacterized protein C12orf56 OS=Homo sapiens GN=C12orf56 PE=2 SV=2  ali   2........................................................................................................................ASPLPSGFPARRNSRLDVFLRRHLPPEVYDAVRAYEPCIVVSNSENHILKVVLSDRLVYLTENPPKSIRRVVAAIDLIDDYPEFLSSPDREISQHI...................................................................................................................................................................................................................... 103
4 -4.890sp|Q8NHS9|SPT22_HUMAN Spermatogenesis-associated protein 22 OS=Homo sapiens GN=SPATA22 PE=1 SV=2  ali   11  14.....REHAQKTVLLFEVLAVLDSAVTPGPYY-FLMRDGKNTLPCVF-------EIDRELPRLIRGRVHRCVGNYDQKKNIFQCVSVRPAS-----------------VSEQKTFQAFVKIADVEMQYYINVMNET...................................................................................................................................................................................................................................................................................................... 123
5 -4.840tr|D6RC74|D6RC74_HUMAN Uncharacterized protein OS=Homo sapiens GN=SDAD1 PE=4 SV=1  ali   12  2.................................................................................................................................................................SNRNNNKLPSNLPQLQNLIKRDPPAYIEEFLQQYNHYKSNVEIFKLQPNKPSKELAELVMFMAQERKRATSEEPLLCYRLVTATQST...................................................................................................................................................................................... 88
6 -4.270sp|Q71RC2|LARP4_HUMAN La-related protein 4 OS=Homo sapiens GN=LARP4 PE=1 SV=3  ali   21  1..........................................................................................................................................AINTFFAKNGYRLMDSSIYSHPI--QTQAQYASPVFMQPVYNPHQQSVY-------VPQSWSPNPTPYFETPLAPFPNGSFV.................................................................................................................................................................................................................. 76
7 -4.100tr|B4DLH5|B4DLH5_HUMAN Uncharacterized protein OS=Homo sapiens GN=CEP120 PE=2 SV=1  ali   10  7..................................VLNEEGGYHQ--IGPAEYCTDSFIM--SVTIAFATQLEQLIPCTMKLPERQPEFFFYYSLLGNDVTNEPFNDLINPNFEPERASVRIRSS------------VEILRVYLALQSKLQIH--LCCGDQSLGSTEI-----------LLKKGSTEINQHPVTVEGAFTLDPPNRAKQKLAPIPVELAPTVGVSVAL.......................................................................................................................................................................................................... 175
8 -4.100sp|Q8N960|CE120_HUMAN Centrosomal protein of 120 kDa OS=Homo sapiens GN=CEP120 PE=2 SV=2  ali   10  7..................................VLNEEGGYHQ--IGPAEYCTDSFIM--SVTIAFATQLEQLIPCTMKLPERQPEFFFYYSLLGNDVTNEPFNDLINPNFEPERASVRIRSS------------VEILRVYLALQSKLQIH--LCCGDQSLGSTEI-----------LLKKGSTEINQHPVTVEGAFTLDPPNRAKQKLAPIPVELAPTVGVSVAL.......................................................................................................................................................................................................... 175
9 -3.970sp|Q2NKJ3|CTC1_HUMAN CST complex subunit CTC1 OS=Homo sapiens GN=CTC1 PE=1 SV=2  ali   11  95........PSAFCPAQVLLGVLVASSHKGC---LQLRDQSGSLPCLLLAKHSQP----LSDPRLIGCLVRAE-----------RFQLIVERD----------VRSSFPSWKELSMPGFIQKQQARVYVQFFLADALI..................................................................................................................................................................................................................................................................................................... 195
10 -3.880sp|Q96JG6|CC132_HUMAN Coiled-coil domain-containing protein 132 OS=Homo sapiens GN=CCDC132 PE=1 SV=3  ali   3......................................................................................................................................................................................NTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAIYTFFGRNDSLESTGLGLSSSRLRTTLNRIQESL............................................................................................................................................................................. 77

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 0 5 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24