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Query: [E] COG1280 Putative threonine efflux protein, from COG1018

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNTALLGLFIPTFFFVSITPGMNMTLALTLGMSVGYRRTLWMMVGELLGVALVAVSAVVGIAAVMLRYPDIFTLFKIVGASYLVYLGVQMWRSRGKLAINIEQENTYQGSDWGLLVQGFVTAIANPKGWAFMVSLLPPFIDQSLSLAPQLTVLVAIILLSEFISMSLYATGGKGLKRLLSQAHHVRLLNRIAGSLMAGVGIWLYFSLast
1 -6.960sp|Q9UHC9|NPCL1_HUMAN Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=1 SV=1  ali   10  1.................FEVGAPVYFVTTLGYNFSSEAGMNAICSSAGCNNFSFTQKIQYATEFPEQSYLAIPASSWVD--FIDWLTPSSCCRLYISGPNKDKFCPSTVNSLNCLKNCMSITMGSPSVEQFH-KYLPWFLNDRPN............................................................. 128
2 -6.260sp|Q96BY7|ATG2B_HUMAN Autophagy-related protein 2 homolog B OS=Homo sapiens GN=ATG2B PE=1 SV=5  ali   14  1...............................VLLNINHGLIAVFTDVKQDNGDLLENKHGEFWLEFNSGSLFCVTKYEGFDDKHYICLHS-------------------SSFSLYHKGIVNGVILPTETRLPSSTRPHWLEP................................................................ 92
3 -6.210tr|B4DET3|B4DET3_HUMAN Uncharacterized protein OS=Homo sapiens GN=NPC1 PE=2 SV=1  ali   10  1.....................PPVYFVLEEGHDYTSSKGQNMVCGGMGCNNDSLVQQIFNAAQLDNYTRIGFAPSSWID--YFDWVKPQSSCCRVDNITDQFCNASVVDPACVRCRPLTPEGKQRPQGGDFM-RFLPMFLSDNPNPKCGKGGHAAYSSAVNILLGHGTRVGATYFMTYHTVLQTSAFIDALKKARLIASNVTETMG 184
4 -6.210sp|O15118|NPC1_HUMAN Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2  ali   10  1.....................PPVYFVLEEGHDYTSSKGQNMVCGGMGCNNDSLVQQIFNAAQLDNYTRIGFAPSSWID--YFDWVKPQSSCCRVDNITDQFCNASVVDPACVRCRPLTPEGKQRPQGGDFM-RFLPMFLSDNPNPKCGKGGHAAYSSAVNILLGHGTRVGATYFMTYHTVLQTSAFIDALKKARLIASNVTETMG 184
5 -6.120sp|O75592|MYCB2_HUMAN Probable E3 ubiquitin-protein ligase MYCBP2 OS=Homo sapiens GN=MYCBP2 PE=1 SV=3  ali   12  22...............VLVLPGNEALFSLETASDYGFKKELANLGGVCAAALMKKDLALPIGNELEEDLEILEEAALQVCKTHILGKGLALSHSPTILEALEGNLPLQIQSNEQSFLDDFIACVPGSSG-----GRLARWLQPDS.............................................................. 176
6 -5.250sp|Q52LD8|RFTN2_HUMAN Raftlin-2 OS=Homo sapiens GN=RFTN2 PE=1 SV=3  ali   16  11.............................................................................TEFAYYVLLDFTLQASSNPEVIKINSILDIVTKVENYYLKGYIVGAIHP................................................................................ 60
7 -5.250sp|Q8IWY9|CDAN1_HUMAN Codanin-1 OS=Homo sapiens GN=CDAN1 PE=1 SV=4  ali   13  2...............................................................FAVVLLSLRLLAKFLG--FVAFLPYRGPEPPPTGELQDSILALRSQVPPVLDVRTLLQRGLQARRAVLTVPWLVEFLSFADHVVPLLEYYRDIFTLLLRL........................................... 99
8 -5.240sp|O94952|FBX21_HUMAN F-box only protein 21 OS=Homo sapiens GN=FBXO21 PE=2 SV=2  ali   8  73............................................................LVCILNMEGRKALTWKYYAKKILYYLRQQKILNN---------------------LKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLK......................................................... 140
9 -5.020sp|Q9NRR4|RNC_HUMAN Ribonuclease 3 OS=Homo sapiens GN=DROSHA PE=1 SV=2  ali   11  62..........................................................ITVSPPTNFLTDRPTVIEYDDHEYI-FEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPENFCVKGLELFSLFLPRFVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVT......... 229
10 -5.020sp|Q9NT68|TEN2_HUMAN Teneurin-2 OS=Homo sapiens GN=ODZ2 PE=1 SV=3  ali   13  1....................................................................PDFQMVIGFHGGLYLVHFTQRDYDVLAGRWTSPDYTMWKNVGKEPAPFNLYMFKSNNP................................................................................ 63
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;