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Query: [M] COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein), from COG1018

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTISKLWVSSLALLATVSLPLQAASPVTVGSKIDTEGALLGNMILQVLESHGVKTVNKIQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWKNAKQGFEKVKKLDAEQNKLVWLTPAPANNTWTIAIRQDIAEKNKLSSLADLSRYLKEGGTFKLAASAEFIERADALPAFEKAYDFTLNQNQLLSLAGGDTAVTIKAAAQQTSGVNAAMAYGTDGPVAALGLQTLSDPKGVQPIYAPAPVVRESVLQAYPQIADWLQPVFASLDEKTLQQLNARIAVEGLDAKKVAADYLRQKGWVKLast
1 -8.250sp|Q9H6D7|HAUS4_HUMAN HAUS augmin-like complex subunit 4 OS=Homo sapiens GN=HAUS4 PE=1 SV=1  ali   17  29........................................................................................................................................................................................................................................................LSKEDLLQNPYFSKLLLNLSQHVDESGLSTLAKEQAQAWKEVRLHKTTWLRSEILHR 86
2 -4.940tr|B4DXG4|B4DXG4_HUMAN Uncharacterized protein OS=Homo sapiens GN=WNK4 PE=2 SV=1  ali   15  9..........................................................................................................................................................................................................................................................................VECQLQTHNSKMVTFRFDLDGDSPEEIAAAMVYNEFILP 47
3 -4.450sp|Q5D0E6|DALD3_HUMAN DALR anticodon-binding domain-containing protein 3 OS=Homo sapiens GN=DALRD3 PE=2 SV=2  ali   11  118............VLLHCPALRSSPCALRLSQ---LRTVLVADHLARALRAHGVCVRLVPAVRDPHM............................................................................................................................................................................................................................................... 168
4 -4.340sp|Q9GZN8|CT027_HUMAN UPF0687 protein C20orf27 OS=Homo sapiens GN=C20orf27 PE=1 SV=3  ali   11  1......................................................VHFDEKLHDSVVMVTQESDSSFLV---KVGFLKILHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSVVPVPEGYSVKCEYSAHKEGVLKEEILLACEGGTGTCVRVTVQARVMDRHHGTPMLLD............................................................................................................................. 123
5 -4.170tr|E7EP55|E7EP55_HUMAN Uncharacterized protein OS=Homo sapiens PE=4 SV=1  ali   11  2...............................................................................................................................................LCDTALNRQAHYDPQLLQGEQDRAFRSQLESQAQRQIQPGHSAKRY--LRGLLRTWPPDAMYRLWCAGYIKDSVLLQDSQLNVPKKLRPQQDLSGVPPKYHLLPVF........................................................ 111
6 -3.990sp|Q8N130|NPT2C_HUMAN Sodium-dependent phosphate transport protein 2C OS=Homo sapiens GN=SLC34A3 PE=1 SV=2  ali   17  7.......................................................................................................................................................................................................................................................ALGAASLTPRAQAPDILKVLTKPLT-HLIVQLDSDM-------MSSATGNATNSSLIK 57
7 -3.790sp|Q147U7|CC043_HUMAN Uncharacterized protein C3orf43 OS=Homo sapiens GN=C3orf43 PE=2 SV=2  ali   14  7.................................................................................................................................................TLISLKEAMKRVDHKLQALETQFKELDFTKDNLMQKFEHH-SKALASQAAQDEMWTAVRALQLTSMELNILYSYVIE----------------------VLICLHTRVLEKLPDLVRGLPTLASVLRRKV----------KNKRVRVVWESILEECGLQE 133
8 -3.600tr|C9JA38|C9JA38_HUMAN Uncharacterized protein OS=Homo sapiens GN=DALRD3 PE=4 SV=2  ali   11  4............VLLHCPALRSSPCALRLSQ----RTVLVADHLARALRAHGVCVRLVPAVRDPHM............................................................................................................................................................................................................................................... 54
9 -3.600sp|Q5TKA1|LIN9_HUMAN Protein lin-9 homolog OS=Homo sapiens GN=LIN9 PE=1 SV=1  ali   11  8...........................................................................................................................................................................................................................................................EFLIQVTRLSKILMIKKEHI--KKLREMNTEAEKLKSYSMPISIEFQRRYATI. 58
10 -3.530sp|Q9UBL6|CPNE7_HUMAN Copine-7 OS=Homo sapiens GN=CPNE7 PE=2 SV=1  ali   19  6....................................................................................................................................................................................................................................DMQVLDGDDGVLRSPRGEPALRDIV--QFVPFRELKNASPAALAKCVLAEVPKQV------------EYYSHRGL.. 67
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 7 0 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.