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Query: [S] COG3859 Predicted membrane protein, from COG1018

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MCASKRSFFMSNSKFNVRLLTEIAFMAALAFIISLIPNTVYGWIIVEIACIPILILSFRRGLTAGLVGGLIWGILSMITGHAYILTLSQAFLEYLIAPVSLGIAGLFRQKTASLKLVPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISAILTAIAAFVILIIFVKKFPKLFIYSNYLast
1 -6.450sp|C9JH25|PRRT4_HUMAN Proline-rich transmembrane protein 4 OS=Homo sapiens GN=PRRT4 PE=2 SV=1  ali   8  14..........................................................................................................FAPRESWRRAARTAPVAGTFGLLSGALQGYEVLHALGYGGQSGLGPWPW-WAFQLGLRLGEVGVALPLALLGLYPALC....... 91
2 -5.860sp|Q8N5W8|FA24B_HUMAN Protein FAM24B OS=Homo sapiens GN=FAM24B PE=2 SV=2  ali   12  4LKAAKEPEAVAVKNHNPDKVWWAKNSQAKTIATESCPALQ--RMCASFDSLPPCCCDINEGL................................................................................................................................. 68
3 -4.900sp|Q9P2D8|UNC79_HUMAN Protein unc-79 homolog OS=Homo sapiens GN=UNC79 PE=2 SV=3  ali   11  2..................SLDYQGLYVTLVTLLDLVPLLQHGQHDLGQSIFYTTLLPFLNDDVLSTLPYTMISTLATFPPFLH--DIIEYLSTSFLPMAILGSSRREGVPAHVNLSASSMLMIALECLMKYKQEVWKDLLYVIAYGPSQVKPPAVQMLFH............................... 157
4 -4.810tr|F5H721|F5H721_HUMAN Uncharacterized protein OS=Homo sapiens GN=WBP11 PE=4 SV=1  ali   16  15...RKLEVEYEQKRAQLSQYFD-AVKNAQHVEVESIPLMPHAPSNILIQDIPL.......................................................................................................................................... 65
5 -4.810sp|Q9Y2W2|WBP11_HUMAN WW domain-binding protein 11 OS=Homo sapiens GN=WBP11 PE=1 SV=1  ali   16  15...RKLEVEYEQKRAQLSQYFD-AVKNAQHVEVESIPLMPHAPSNILIQDIPL.......................................................................................................................................... 65
6 -4.730sp|Q9BZC7|ABCA2_HUMAN ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3  ali   8  2LRQKKPTISVKEAFYTAAPLTSAGILPVMQSLCPDGQRDEFGFLQYANSTVTQLLERL..................................................................................................................................... 59
7 -4.710sp|Q9UBK2|PRGC1_HUMAN Peroxisome proliferator-activated receptor gamma coactivator 1-alpha OS=Homo sapiens GN=PPARGC1A PE=1 SV=1  ali   12  64IISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPV--DEDGLPSFDALT........................................................................................................................................... 113
8 -4.350sp|Q6P4D5|F222C_HUMAN Protein FAM122C OS=Homo sapiens GN=FAM122C PE=1 SV=1  ali   6  84................................................................................................................................................LLMETTAMLDLLVIRQLKSALSQTLLCHLLILVLICSSRQTFN.... 126
9 -4.150sp|Q9BZC7|ABCA2_HUMAN ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3  ali   14  15LLVKRFHCARRNSKALFSQILLPAFFVCVAMTVALSVPEIGDLPPLVLS.............................................................................................................................................. 63
10 -4.080sp|Q7Z6Z7|HUWE1_HUMAN E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens GN=HUWE1 PE=1 SV=3  ali   15  11.......................QFATALFSFLYHLASYDAGGEALSCGMMEALL........................................................................................................................................ 43
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.