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Query: [V] COG4452 Inner membrane protein involved in colicin E2 resistance, from COG1018

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLKSPLFWKMTSLFGAVLLLLIPIMLIRQVIVERADYRSDVEDAIRQSTSGPQKLVGPLIAIPVTELYTVQEEDKTVERKRSFIHFWLPESLMVDGNQNVEERKIGIYTGQVWHSDLTLKADFDVSRLSELNAPNITLGKPFIVISVGDARGIGVVKAPEVNGTALTIEPGTGLEQGGQGVHIPLPEGDWRKQNLKLNMALNLSGTGDLSVVPGGRNSEMTLTSNWPHPSFLGDFLPAKREVSESGFQAHWQSSWFANNLGERFASGNDTGWENFPAFSVAVTTPADQYQLTDRATKYAILLIALTFMAFFVFETLTAQRLHPMQYLLVGLSLVMFYLLLLALSEHTGFTVAWIIASLIGAIMNGIYLQAVLKGWCNSMLFTLALLLLDGVMWGLLNSADSALLLGTSVLVVALAGMMFVTRNIDWYAFSLPKMKASKEVTTDDELRIWKLast
1 -6.010sp|Q96K30|RITA_HUMAN RBPJ-interacting and tubulin-associated protein OS=Homo sapiens GN=RITA PE=1 SV=1  ali   19  1..................................................................................................................................................................................................MKTPVELAVSGMQTLGLQHRCRGGRVKARTSYVDETLFGS--PAGTRPTPPDFDPPW....................................................................................................................................................................................................... 56
2 -5.720sp|Q7L1W4|LRC8D_HUMAN Leucine-rich repeat-containing protein 8D OS=Homo sapiens GN=LRRC8D PE=1 SV=1  ali   12  1.......................................................................................................................................................................................................................................................................................................................LFEKVRKFRAHVEDYVVQTVIKTAKFIFILCYTANFVNAISFEHVCKPKVEHLIGY................................................................................... 63
3 -5.680tr|B5MCI2|B5MCI2_HUMAN Uncharacterized protein OS=Homo sapiens PE=4 SV=1  ali   12  1...........................................................................................................................................................................................................................MESRKDITNQEEIWKMKPRRNLEDNDYLHEDTGETSMLKRPV--LLHLQQTAHADEFDCPSELQHAQELFPQWHLPIKIAAVMASLTFLYTLLREV-----IHP----LATSHQQYFYKIPILVINK........................................................................................................ 116
4 -5.470tr|D6RIE9|D6RIE9_HUMAN Uncharacterized protein OS=Homo sapiens GN=FAM170A PE=4 SV=1  ali   27  18.......................................................................................................................................................................................................................................................................................................................VFTTMEALQEHVQFGIREGFSCHVFHLTMAQLTGNM....................................................................................................... 53
5 -5.470sp|A1A519|F170A_HUMAN Protein FAM170A OS=Homo sapiens GN=FAM170A PE=2 SV=1  ali   27  18.......................................................................................................................................................................................................................................................................................................................VFTTMEALQEHVQFGIREGFSCHVFHLTMAQLTGNM....................................................................................................... 53
6 -5.090sp|O43520|AT8B1_HUMAN Probable phospholipid-transporting ATPase IC OS=Homo sapiens GN=ATP8B1 PE=1 SV=3  ali   28  42.....................................................................................................................................................................................................................................................................................................KTYKYNA----FTFIPMNLFEQFKR.................................................................................................................................... 62
7 -5.050sp|Q6NSJ5|LRC8E_HUMAN Leucine-rich repeat-containing protein 8E OS=Homo sapiens GN=LRRC8E PE=2 SV=2  ali   17  1.......................................................................................................................................................................................................................................................................................................................LFEKVKKFRMHVEEYIRQTVLKVCKFLAILVYNLVYVEKISFLVACRVETSEVTGY................................................................................... 63
8 -5.000sp|Q8NB49|AT11C_HUMAN Probable phospholipid-transporting ATPase IG OS=Homo sapiens GN=ATP11C PE=1 SV=3  ali   25  25.....................................................................................................................................................................................................................................................................................................VSSKYTL----WNFLPKNLFEQFRR--------------IANFYFLIIFLVQVTVDTPTSPVTSGL........................................................................................... 72
9 -4.640sp|Q8TF62|AT8B4_HUMAN Probable phospholipid-transporting ATPase IM OS=Homo sapiens GN=ATP8B4 PE=2 SV=3  ali   30  34.....................................................................................................................................................................................................................................................................................................HTSKYNI----LTFLPINLFEQFQR--------------VANAYFLCLLILQLI....................................................................................................... 69
10 -4.580tr|F2Z2D8|F2Z2D8_HUMAN Uncharacterized protein OS=Homo sapiens GN=ATP9B PE=4 SV=1  ali   22  22.....................................................................................................................................................................................................................................................................................................KNQKYNV----FTFIPGVLYEQFKF--------------FLNLYFLVISCSQFV....................................................................................................... 57
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.