current user: public
If you have questions about the server, please let us know.

Query: [S] COG5395 Predicted membrane protein, from COG1018

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .
# Score Template Links and tools%idFirst MDPHGKSISQASDRWSGLRNAALGVGAATLIVALTAPGAFTDLGAFAQQVRFQPHAPDFSRIAAAPAVVQVHLFSALTALAIGVVLMMRVKGTTLHKLLGWTWVLAMGSTAVSSLFIREINHGAFSFIHLLSGWTIIGLPGAVYAIKRGKVSAHRKAMTGMFVGGLLVAGVFTFLPGRLLWTVFLGLast
1 -5.710tr|B4DSF9|B4DSF9_HUMAN Uncharacterized protein OS=Homo sapiens GN=AGPAT4 PE=2 SV=1  ali   10  2...............................................................................................QLFRKINCRLSYCISSLSAVYDCTLNFRNNENPTLLGVLN--HADLYVRRIPLEDIPEDSAWLHKLYQ....................... 75
2 -5.230sp|Q9H0K6|PUS7L_HUMAN Pseudouridylate synthase 7 homolog-like protein OS=Homo sapiens GN=PUS7L PE=1 SV=1  ali   15  45...............................................................................FSIGRIL--KNQRASLHSAIRQKFPFLVTVGKNSEIVVK.................................................................... 82
3 -5.130sp|Q9Y2G9|SBNO2_HUMAN Protein strawberry notch homolog 2 OS=Homo sapiens GN=SBNO2 PE=2 SV=3  ali   13  154......................................................................HYMLCGALLRVWGRIQIVRLKTKDRKKQVGIKIPEGCVRRVLQEL....................................................................... 211
4 -4.810sp|Q9BZC7|ABCA2_HUMAN ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3  ali   11  1................................................................................................KLDG----GWLKVRQFHGLLVKR-----------------------FHCARRNSKALFSQILLPAFFVCVAMTVALSV-PPLVLSPSQYH 68
5 -4.770sp|Q9H1B7|I2BPL_HUMAN Interferon regulatory factor 2-binding protein-like OS=Homo sapiens GN=IRF2BPL PE=1 SV=1  ali   11  1.......................................................................KMVRDTLLTLAGCTPY-EVRFKKDHSLLGRVFAFDAVSKPGMDYELKLFIEYPTGSGNVYSSASGVALSSGFKYLEYEKKHGSGDWRLLGDLLPEAVRFFKEGVPGADM...... 122
6 -4.730sp|Q8WXG6|MADD_HUMAN MAP kinase-activating death domain protein OS=Homo sapiens GN=MADD PE=1 SV=2  ali   14  3..................................................................LATLLHNLISYMLLMKVNKNDIRKK---VRRLMGKSHIGLVYSQQINEVL...................................................................... 49
7 -4.550sp|A3KN83|SBNO1_HUMAN Protein strawberry notch homolog 1 OS=Homo sapiens GN=SBNO1 PE=1 SV=1  ali   11  156......................................................................YYVLCGSVLSVWTKVQIVRLRTEDGQRIVGLIIPANCVSPLVN......................................................................... 212
8 -4.540sp|Q76FK4|NOL8_HUMAN Nucleolar protein 8 OS=Homo sapiens GN=NOL8 PE=1 SV=1  ali   16  1.....................................................................................................................................................EVPGHKNWVVSKFGRVLPVLHLKNQHKRKII...... 31
9 -4.520sp|Q8NEF3|CC112_HUMAN Coiled-coil domain-containing protein 112 OS=Homo sapiens GN=CCDC112 PE=2 SV=2  ali   12  40.....................................................................................................................................TFMEEVLEHLPGKTQDEVQQHEKW............................. 63
10 -4.520sp|A8MXV4|NUD19_HUMAN Nucleoside diphosphate-linked moiety X motif 19, mitochondrial OS=Homo sapiens GN=NUDT19 PE=1 SV=1  ali   12  6..................................................................LPIILLTADGMVHLLPGKTEEIMKEGKQFHRIVTYHRHLYDIHVTVQP........................................................................ 72
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.