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Query: [M] COG5434 Endopolygalacturonase, from COG1018

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MILSHRYTLIALAAAILSSGAHAAGASVTASWGNVAEPSLPADSAVCKTLAATITPVSGSIDTVDGNPSNSQPDASRIQTAIDNCPAGQAVRLVKGSAGESGFLSGSLKLKSGVTLWIDTGVTLFASRNPADFDNGVGTCGTATTSNTKSCNALIVARDTVGSGIVGDGIIDGRGGSLVTSGPNANRLTWWDIAYLNKTKGLNQQNPRLVQLYNGSAFTLYRVTVQNSPNFHIVTTGTAGVTAWGIKIVTPSLAYTVPGYKCAAGTTPDKVTPATCFTPETVKNTDGFDPGQSTNVVLANSYISTGDDHVAIKASGGATRNLLFAHNHFYYGHGLSIGSETDGGVSNMQVTDLAMDGNDSSGGNGLRIKSDISRGGKVNNIVYNGICMRNVKEPLVFDPFYSTAKGSLYPNFTNIVVKNFHDLGSAKGIARTMTFLGYEAKKRTNPLTLTLDNVVFDGTQPAFDVAHNGGPASPNGTHFTFGGNGPVSFANAIVTSSTTDVTVTGTPGTAAAVDCSNAFVPLKSVAPTSPILast
1 -6.700sp|O94985|CSTN1_HUMAN Calsyntenin-1 OS=Homo sapiens GN=CLSTN1 PE=1 SV=1  ali   1...........................................................................................................................................................................................................................................................................................EEIVHDLDTCE-VTVEGEELNHEQESLEVDMARLQQKGIEVSS----SELGMTFGVDTMASYEEV-LHLLRYRNWHARLDRKFKLICSELNGRYISNEFKVEVNV............................................................................................................................................... 102
2 -6.670sp|Q9H4D0|CSTN2_HUMAN Calsyntenin-2 OS=Homo sapiens GN=CLSTN2 PE=1 SV=2  ali   11  1.............................................................................................................................................................................................................................................................................................EMLHNLDFCDILVIGGDLDPRQECLELNHSELHQRHLDATNST----AGYSIGVGSMSRYEQV-LHHIRYRNWRPAEARRFRIKCSELNGRYTSNEFNLEVSILHEDQV......................................................................................................................................... 107
3 -6.600sp|Q9BQT9|CSTN3_HUMAN Calsyntenin-3 OS=Homo sapiens GN=CLSTN3 PE=1 SV=1  ali   1...........................................................................................................................................................................................................................................................................................DEIVHNLDGCE-ISLVGDDLDPERESLLLDTTSLQQRGLELTNTS----AYLTIGVESITVYEEI-LRQARYRLRHGAYTRKFRLSCSEMNGRYSSNEFIVEVNV............................................................................................................................................... 102
4 -6.550sp|Q8NDG6|TDRD9_HUMAN Putative ATP-dependent RNA helicase TDRD9 OS=Homo sapiens GN=TDRD9 PE=2 SV=3  ali   14  8..................................................................................................................................................................................................................................................................................................................DEEMAVRAGKDPKTTVVLKHI----------GFLYYKQLQSLFRQSIVFDGAKA-----VEFSRNPTERFKTLPAVYMAIKMSQLKVSLELSVH---SAEEIEGKVQGMNVSKL............................................................................................................... 114
5 -4.450tr|E9PDT7|E9PDT7_HUMAN Uncharacterized protein OS=Homo sapiens GN=AFAP1 PE=4 SV=1  ali   17  2...............................................................................................................................................................................................................................................................................................IDVEMSASV------IQTAKQTFCFMNRRVISANPYLGG----TSNGYAHPSGTALHYDDVPCINGSWEGFPASCSRGLGEEVLYDNAGLYDNL...................................................................................................................................................... 88
6 -3.880sp|P60852|ZP1_HUMAN Zona pellucida sperm-binding protein 1 OS=Homo sapiens GN=ZP1 PE=2 SV=1  ali   9...........................................................................................................................................................................................................................................................................................................RHSYDCGIKGMQLLVFPRPGQTLRFKDVNNCSICYHWVTSRPQEPA-SADYRGCHVLEKDGRFHLRVFMEAVLPNG............................................................................................................................................................ 94
7 -3.790sp|Q13148|TADBP_HUMAN TAR DNA-binding protein 43 OS=Homo sapiens GN=TARDBP PE=1 SV=1  ali   13  2....................................................................................................................................................................................................................................................................................................SEYIRVTE---DENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGIL................................................................................................................................................................................ 61
8 -3.770sp|Q6P9G0|CB5D1_HUMAN Cytochrome b5 domain-containing protein 1 OS=Homo sapiens GN=CYB5D1 PE=2 SV=1  ali   10  34..................................................................................................................................................................................................................................................................................................................GSYYEVGRLSAKTRSIRIINTLTSQEHTLEVGVLES--IWEILHRYLPYNSHAASYTKNLNMDFTLEENGIRDE-EFDYLSMDGTLHTPAILLYFNDD............................................................................................................................... 135
9 -3.700sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4 OS=Homo sapiens GN=CNOT4 PE=1 SV=3  ali   14  36..................................................................................................................................................................................................................................................................................................................NSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIPVAGEEEVKVSTM.................................................................................................................................................................................. 82
10 -3.690sp|Q02413|DSG1_HUMAN Desmoglein-1 OS=Homo sapiens GN=DSG1 PE=1 SV=2  ali   14  5...............................................................................................................................................................................................................................................NVTVTESYTTSDTLKPSVHVHD--NRPASNVVVTERVVGPISGADLHGMDLRDGSNVIVTERVIAPSSPTSLTIHHPRESSNVVVTERVIQPTSGMIGSLSMHPELHNVIVTE................................................................................................................................................................................... 124

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 6 4 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.